Job Description P19323 Confidence 98.19% Date Thu Jan 5 11:37:18 GMT 2012 Rank 135 Aligned Residues 105 % Identity 27% Template c3n70F_ PDB info PDB header:transport protein Chain: F: PDB Molecule:transport activator; PDBTitle: the crystal structure of the p-loop ntpase domain of the sigma-542 transport activator from e. coli to 2.8a Resolution 2.80 Å

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		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	A	M	Y	S	V	L	K	Q	V	E	M	V	A	Q	S	D	S	T	V	L	I	L	G	E	T	G	T	G	K	E	L	I	A	R	A	I	H	N	L	S	G	R	N	N	R	R	M	V	K	M	N	C	A	A	M	P	A	G	L	L	E	S	D	L	F	G	H	E	R	G	A	F	T	G	A	S	A	Q
Query Conservation
Alig confidence																.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	E	W	I	N	Q	Y	R	R	R	L	Q	Q	L	.	.	.	.	.	.	.	W	L	Y	G	A	P	G	T	G	R	X	T	G	A	R	Y	L	H	.	.	.	.	.	.	.	.	.	F	V	Y	R	E	L	T	P	D	N	A	P	Q	L	N	D	F	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														T		.	.	.	.	.	.	.		B			S	S	S	T	T						T	T	T		.	.	.	.	.	.	.	.	.								T	T	T	S	T	T					T	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.								.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180										.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	G	R	F	E	L	A	D	K	S	S	L	F	L	D	E	V	G	D	M	P	L	E	L	Q	P	K	L	L	R	V	L	Q	E	Q	E	F	E	R	L	G	S	N	K	I	I	Q	T	D	V	R	L	I	A	A	T	N	R	D	L	K	K	M	V	A	D	R	E	F	R	S	D	L	Y	Y	R	L	N	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	A	L	T	L	V	L	S	H	P	E	H	L	T	R	E	Q	Q	Y	H	L	V	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	D	T	S	L	V	E	L	A	A	S	N	H	I	I	A	E	L	Y	Y	C	F	A	X
Template Known Secondary structure		.	.	.	.	.	.	.	.	.								S	G	G	G	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													S												T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
											215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.																								.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		545	.	.	.	.	550	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	I	H	L	P	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	Q	I	A	C	L	P
Template Known Secondary structure				B
Template Predicted Secondary structure
Template SS confidence
		279	280	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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