Job Description P19323 Confidence 99.95% Date Thu Jan 5 11:37:18 GMT 2012 Rank 10 Aligned Residues 132 % Identity 23% Template c3co5B_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:putative two-component system transcriptional response PDBTitle: crystal structure of sigma-54 interaction domain of putative2 transcriptional response regulator from neisseria gonorrhoeae Resolution 2.40 Å

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		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	E	A	M	Y	S	V	L	K	Q	V	E	M	V	A	Q	S	D	S	T	V	L	I	L	G	E	T	G	T	G	K	E	L	I	A	R	A	I	H	N	L	S	G	R	N	N	R	R	M	V	K	M	N	C	A	A	M	P	A	G	L	L	E	S	D	L	F	G	H	E	R	G	A	F	T	G	A	S	A
Query Conservation
Alig confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	S	A	A	I	Q	E	X	N	R	E	V	E	A	A	A	K	R	T	S	P	V	F	L	T	G	E	A	G	S	P	F	E	T	V	A	R	Y	F	H	K	N	G	T	P	W	V	S	P	A	R	V	E	Y	L	I	D	X	P	X	E	L	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																		T		S	S								T	T									T	T			T	T	S						S	S	T	T												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	I	G	R	F	E	L	A	D	K	S	S	L	F	L	D	E	V	G	D	M	P	L	E	L	Q	P	K	L	L	R	V	L	Q	E	Q	E	F	E	R	L	G	S	N	K	I	I	Q	T	D	V	R	L	I	A	A	T	N	R	D	L	K	K	M	V	A	D	R	E	F	R	S	D	L	Y	Y	R	L	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation		.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Sequence		.	.	.	.	.	.	.	K	A	E	G	G	V	L	Y	V	G	D	I	A	Q	Y	S	R	N	I	Q	T	G	I	T	F	I	I	G	K	A	E	.	.	.	.	.	.	.	.	.	.	R	C	R	V	R	V	I	A	S	C	S	Y	A	A	.	.	.	.	G	S	D	S	C	E	E	K	L	A	G	L	F	S
Template Known Secondary structure		.	.	.	.	.	.	.		T	T	T	S								T	T																	T	.	.	.	.	.	.	.	.	.	.	T	T	T											T	.	.	.	.	T	T											S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template SS confidence
									202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.											.	.	.	.	.	.	.	240	.	.	.	.	.	.					.	.	.	250	.	.	.	.	.	.	.	.	.	260
		544	.	.	.	.	.	550	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	P	I	H	L	P	P	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	S	V	V	R	I	P	P	L
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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