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Job DescriptionP19323
Confidence99.87%DateThu Jan 5 11:37:18 GMT 2012
Rank11Aligned Residues313
% Identity10%Templatec2veaA_
PDB info PDB header:transferaseChain: A: PDB Molecule:phytochrome-like protein cph1; PDBTitle: the complete sensory module of the cyanobacterial2 phytochrome cph1 in the pr-state.
Resolution2.21 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30.........40.........50.........60.........70.........80.... .....90.
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Query Sequence  LFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTPIKYEDETVLAHGPV. . RSILSRP
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Template Sequence  FYHMANAALNRLNLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRLFIHN
Template Known Secondary structure  TT




S
TTS

TTS


TT

GGGS

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   136...140.........150.........160.........170.........180.........190.........200.........210.....
 
   92.......100... ......110.........120.........130.........140.......
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Query Sequence  DTLHCSYEEFCE. . . . . . . . . . . . . . . . . . . . . . . . TWPQLDAGGLYPKFGHYCLMPLAAEGHIFGGCEFIRYDDRPWSE
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Template Sequence  PIRVIPDVYGVAVPLTPAVNPSTNRAVDLTESILRSAYHCHLTYLKNMGVGASLTISLIKDGHLWGLIACHHQTPKVIPF
Template Known Secondary structure  SS
SSS

SSTTTT


TT
SSB


T
STTSS




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   220.........230.........240.........250.........260.........270.........280.........290.........
 
   148.150.........160.........170.........180.........190.........200.........210.........220.......
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Query Sequence  KEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVL
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Template Sequence  ELRKACEFFGRVVFSNISAQEDTETFDYRVQLAEH. . . . . . . EAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAAICF
Template Known Secondary structure  .......SSST
TTT
S
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   300.........310.........320.........330.... .....340.........350.........360.........370..
 
   228.230.........240.........250.........260.........270.........280.........290.........300.......
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Query Sequence  RSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMS
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Template Sequence  GEK. . . . . . . LILVGETPDEKAVQYLLQ. . . . . . WLENREVQDVFFTSSLSQIY. . . . . . PDAVNFKSVASGLLAIPIAR
Template Known Secondary structure  TT.......S


......TT

S
S
GGGTS......GGGGGGTTT
S
SS
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   373.. ....380.........390... ......400.........410... ......420.........430...
 
   308. 310.........320.........330.........340 .........
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Query Sequence  GD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TMLGVLKLAQCEEKVFTTTNLNLLRQIAERV. AIAVDNALA
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Template Sequence  HNFLLWFRPEVLQTVNWGGDPNHAYEATQKIELHPRQSFDLWKEIVRLQS. . LPWQSVEIQSALALKKAIVNLILRQAEE
Template Known Secondary structure  S




S
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   434.....440.........450.........460.........470.........480... ......490.........500.........510.
 
   350....
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Query Sequence  YQEIH
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Template Conservation       
Template Sequence  HHHHH
Template Known Secondary structure  T



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   515....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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