Job Description P19323 Confidence 98.88% Date Thu Jan 5 11:37:18 GMT 2012 Rank 118 Aligned Residues 225 % Identity 15% Template c2v1uA_ PDB info PDB header:replication Chain: A: PDB Molecule:cell division control protein 6 homolog; PDBTitle: structure of the aeropyrum pernix orc1 protein in complex2 with dna Resolution 3.10 Å

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		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.			.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.							.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.																						.	.	.	.	.	.
Query SS confidence																																								.	.																						.	.	.	.	.	.
Query Sequence		L	T	E	Q	L	N	N	V	D	S	E	F	G	E	I	I	G	R	S	E	A	M	Y	S	V	L	K	Q	V	E	M	V	A	Q	S	D	S	T	.	.	V	L	I	L	G	E	T	G	T	G	K	E	L	I	A	R	A	I	H	N	L	.	.	.	.	.	.	S	G	R	N	N	R	R	M	V	K	M	N	C
Query Conservation																																								.	.																						.	.	.	.	.	.
Alig confidence																																								.	.																						.	.	.	.	.	.
Template Conservation
Template Sequence		R	K	R	W	V	L	L	P	D	Y	V	P	D	V	L	P	H	R	E	A	E	L	R	R	L	A	E	V	L	A	P	A	L	R	G	E	K	P	S	N	A	L	L	Y	G	L	T	G	T	G	K	T	A	V	A	R	L	V	L	R	R	L	E	A	R	A	S	S	L	G	V	L	V	K	P	I	Y	V	N	A
Template Known Secondary structure		S						S	T	T				S			T	T											T	T	G	G	G	T	S	S										B		T	T	S	S																				T										T
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.										.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.		.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.																				.
Query SS confidence																														.	.	.	.	.	.	.	.	.																				.
Query Sequence		A	A	M	P	A	G	L	L	E	S	D	L	F	G	H	E	R	G	A	F	T	G	A	S	A	Q	R	I	.	.	.	.	.	.	.	.	.	G	R	F	E	L	A	D	K	S	S	L	F	L	D	E	V	G	D	M	.	P	L	E	L	Q	P	K	L	L	R	V	L	Q	E	Q	E	F	E	R	L	G	S	N
Query Conservation																														.	.	.	.	.	.	.	.	.																				.
Alig confidence																														.	.	.	.	.	.	.	.	.																				.																	.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		R	H	R	E	T	P	Y	R	V	A	S	A	I	A	E	A	V	G	V	R	V	P	F	T	G	L	S	V	G	E	V	Y	E	R	L	V	K	R	L	S	R	L	R	G	I	Y	I	I	V	L	D	E	I	D	F	L	P	K	R	P	G	G	Q	D	L	L	Y	R	I	T	R	I	N	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	S		S													S					S	S																T	T	S		S								T	T	T					S	T	T											G	G	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	I	Q	T	D	V	R	L	I	A	A	T	N	R	D	L	K	K	M	V	A	D	R	E	F	R	S	D	L	Y	Y	R	L	N	V	F	P	I	H	L	P	P	L	R	E	R	P	E	D	I	P	L	L	A	K	A	F	T	F	K	I	A	R	R	L	G	R	N	I	D	S	I	P	A	E	T	L	R	T
Query Conservation
Alig confidence		.	.	.															.	.	.	.																									.	.																					.	.	.	.	.
Template Conservation		.	.	.															.	.	.	.																									.	.																					.	.	.	.	.
Template Sequence		.	.	.	Q	E	L	V	S	L	V	G	I	T	N	S	L	G	.	.	.	.	F	V	E	N	L	E	P	R	V	K	S	S	L	G	E	V	E	L	V	F	P	P	Y	T	.	.	A	P	Q	L	R	D	I	L	E	T	R	A	E	E	A	F	N	P	G	V	.	.	.	.	.	L	D	P	D	V	V	P	L
Template Known Secondary structure		.	.	.	G										S		S	T	.	.	.	.	T	S	S	S	S						T	T	T	T	S					B					.	.																B		T	T	T	.	.	.	.	.	B		S	S
Template Predicted Secondary structure		.	.	.															.	.	.	.																									.	.																					.	.	.	.	.
Template SS confidence
					172	.	.	.	.	.	.	.	180	.	.	.	.	.					.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.						230	.	.	.	.	.	.	.
		589			590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		L	.	.	S	N	M	E	W	P	G	N	V	R	E	L	E	N	V	I	E	R	A	V	L	L	T
Query Conservation			.	.
Alig confidence			.	.
Template Conservation
Template Sequence		C	A	A	L	A	A	R	E	H	G	D	A	R	R	A	L	D	L	L	R	V	A	G	E	I	A
Template Known Secondary structure								S	S	S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions