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Job DescriptionP19323
Confidence99.65%DateThu Jan 5 11:37:18 GMT 2012
Rank50Aligned Residues207
% Identity19%Templatec2hcbC_
PDB info PDB header:replicationChain: C: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: structure of amppcp-bound dnaa from aquifex aeolicus
Resolution3.51 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   372.......380 ... ......390.........400.........410.........420.........430.........440........
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Query Sequence  NNVDSEFGE. IIG. . RSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLES
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Template Sequence  LNPKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD. . . . . FAQ
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TT

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   7980.........90.........100.........110.........120.........130.........140.........150 ...
 
   449450.........460.........470.........480.........490.........500.........510.........520........
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Query Sequence  DLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKM
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Template Sequence  AMVEHLKKGTINEFRNM. . . . . YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLE. . . . . . . . KQIILASDRHPQKL
Template Known Secondary structure  T

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GGGGTT
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GGG
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   154.....160.........170 .........180.........190.........200...... ...210.........220
 
   529530.........540......... 550.........560.........570.........580.........590.........600......
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Query Sequence  VADREFRSDLYYRLNVFPIHL. . PPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIE
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Template Sequence  . . . DGVSDRLVSRFEGGILVEIELDNKTRFK. . . . . . . . IIKEKLKEFNLE. . . LRKEVIDYLLEN. . TKNVREIEGKIK
Template Known Secondary structure  ...TTS
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   221........230.........240........ .250.........260 .........270.. .......280....
 
   607..610..
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Query Sequence  RAVLLT
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Template Sequence  LIKLKG
Template Known Secondary structure  TTS
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   285....290
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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