Job Description P19323 Confidence 99.26% Date Thu Jan 5 11:37:18 GMT 2012 Rank 80 Aligned Residues 211 % Identity 22% Template c2chgB_ PDB info PDB header:dna-binding protein Chain: B: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c domains 1 and 2 Resolution 2.1 Å

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		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	F	G	E	I	I	G	R	S	E	A	M	Y	S	V	L	K	Q	V	E	M	V	A	Q	S	D	S	T	V	L	I	L	G	E	T	G	T	G	K	E	L	I	A	R	A	I	H	N	L	S	G	R	N	N	R	R	M	V	K	M	N	C	A	A	M	P	A	G	L	L	E	S	D	L	F	G	H	E	R	G
Query Conservation
Alig confidence																						.	.
Template Conservation																						.	.
Template Sequence		T	L	D	E	V	V	G	Q	D	E	V	I	Q	R	L	K	G	Y	V	E	.	.	R	K	N	I	P	H	L	L	F	S	G	P	P	G	T	G	K	T	A	T	A	I	A	L	A	R	D	L	F	G	E	N	W	R	D	N	F	I	E	M	N	A	S	D	E	R	G	I	D	V	V	R	H	K	I	K	E	F
Template Known Secondary structure		S	G	G	G			S														.	.	T	T									S		T	T	S	S														G	G	G	T	G	G	G						T	T		T	T
Template Predicted Secondary structure																						.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		457	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	T	G	A	S	A	Q	R	I	G	R	F	E	L	A	D	K	S	S	L	F	L	D	E	V	G	D	M	P	L	E	L	Q	P	K	L	L	R	V	L	Q	E	Q	E	F	E	R	L	G	S	N	K	I	I	Q	T	D	V	R	L	I	A	A	T	N	R	D	L	K	K	M	V	A	D	R	E	F	R	S
Query Conservation
Alig confidence											.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Sequence		A	R	T	A	P	I	G	G	A	.	.	.	.	.	.	.	P	F	K	I	I	F	L	D	E	A	D	A	L	T	A	D	A	Q	A	A	L	R	R	T	M	E	M	Y	S	.	.	.	.	.	.	.	.	.	.	.	K	S	C	R	F	I	L	S	C	N	Y	.	.	.	.	.	.	.	V	S	R	I	I	E
Template Known Secondary structure			T	S			S	T	T		.	.	.	.	.	.	.	S								T	G	G	G	S																T	.	.	.	.	.	.	.	.	.	.	.	T	T								S		.	.	.	.	.	.	.	G	G	G	S
Template Predicted Secondary structure											.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.								.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130												.	.	.	.	.	.	.	.	.	140	.								.	.	.	.	.	.
		537	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	Y	Y	R	L	N	V	F	P	I	H	L	P	P	L	R	E	R	P	E	D	I	P	L	L	A	K	A	F	T	F	K	I	A	R	R	L	G	R	N	I	D	S	I	P	A	E	T	L	R	T	L	S	N	M	E	W	P	G	N	V	R	E	L	E	N	V	I	E	R	A	V	L	L	T	R	G	N	V
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.																			.	.	.														.																.	.
Template Conservation																	.	.	.	.	.	.	.	.																			.	.	.														.																.	.
Template Sequence		P	I	Q	S	R	C	A	V	F	R	F	K	P	V	P	.	.	.	.	.	.	.	.	K	E	A	M	K	K	R	L	L	E	I	C	E	K	E	G	V	K	.	.	.	I	T	E	D	G	L	E	A	L	I	Y	I	S	.	G	G	D	F	R	K	A	I	N	A	L	Q	G	A	A	.	.	A	I	G	E	V
Template Known Secondary structure						T											.	.	.	.	.	.	.	.																T			.	.	.														.	T	T														.	.	T	T		S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.																			.	.	.														.																.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.									.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180				.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.			.	210	.	.	.
		617	.	.	620	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	L	S	L	P	D	I	V	L	P	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D	A	D	T	I	Y	Q	I	T	A	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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