Job Description P19323 Confidence 99.19% Date Thu Jan 5 11:37:18 GMT 2012 Rank 85 Aligned Residues 199 % Identity 21% Template c1xwiA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:skd1 protein; PDBTitle: crystal structure of vps4b Resolution 2.80 Å

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		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.											.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.
Query Sequence		E	F	G	E	I	I	G	R	S	E	A	M	Y	S	V	L	K	Q	V	E	M	V	A	Q	S	.	.	.	.	.	.	.	.	.	.	D	S	T	V	L	I	L	G	E	T	G	T	G	K	E	L	I	A	R	A	I	H	N	L	S	G	R	N	N	R	R	M	V	K	M	N	C	A	A	M	P	A	G	L	L
Query Conservation																											.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.																										.	.												.	.	.	.	.	.	.
Template Conservation																																																														.	.												.	.	.	.	.	.	.
Template Sequence		K	W	S	D	V	A	G	L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	I	K	F	P	H	L	F	T	G	K	R	T	P	W	R	G	I	L	L	F	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	.	.	N	N	S	T	F	F	S	I	S	S	S	.	.	.	.	.	.	.
Template Known Secondary structure			G	G	G	S		S																			G	G	G	S		T	T					S						S	S	S	S	S													T	.	.	T	S										.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.												.	.	.	.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.			.	.	.	.	.	.	.	.	200	.	.
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.												.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	S	D	L	F	G	H	E	R	G	A	F	T	G	A	S	A	Q	R	I	G	R	F	E	L	A	D	K	S	S	L	F	L	D	E	V	G	D	M	.	.	.	.	.	.	.	.	.	.	.	P	L	E	L	Q	P	K	L	L	R	V	L	Q	E	Q	E	F	E	R	L	G	S	N	K	I	I	Q	T	D	V
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																																						.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.
Template Conservation		.	.																																																															.	.	.	.	.	.	.	.
Template Sequence		.	.	D	L	V	S	K	W	L	G	E	S	E	K	L	V	K	N	L	F	Q	L	A	R	E	N	K	P	S	I	I	F	I	D	E	I	D	S	L	C	G	S	R	S	E	N	E	S	E	A	A	R	R	I	K	T	E	F	L	V	Q	M	Q	G	.	.	.	.	.	.	.	.	V	G	V	D	N	D	G	I
Template Known Secondary structure		.	.	S	S			S	S			S															T	S	S							T	T	T	G	G	G			S	S	S			T	T																.	.	.	.	.	.	.	.	S	S	S			T	T
Template Predicted Secondary structure		.	.																																																															.	.	.	.	.	.	.	.
Template SS confidence
				203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.									.	.	.	.	.	270	.	.
		516	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.		.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		R	L	I	A	A	T	N	R	D	L	K	K	M	V	A	D	R	E	F	R	S	D	L	Y	Y	R	L	N	.	V	F	P	I	H	L	P	P	L	R	E	R	P	E	D	I	P	L	L	A	K	A	F	T	F	K	I	A	R	R	L	G	R	N	I	D	S	I	P	A	E	T	L	R	T	L	S	N	M	E	W
Query Conservation																														.
Alig confidence											.	.	.	.	.	.	.													.															.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	L	G	A	T	N	I	P	.	.	.	.	.	.	.	W	V	L	D	S	A	I	R	R	R	F	E	K	R	I	Y	I	P	L	P	E	P	H	A	R	A	A	.	.	.	.	.	.	.	.	.	.	.	M	F	K	L	H	L	G	T	T	Q	N	S	L	T	E	A	D	F	R	E	L	G	R	K	T	D
Template Known Secondary structure								S		T	.	.	.	.	.	.	.	T	T	S							T																		.	.	.	.	.	.	.	.	.	.	.							T	T			B													T		T
Template Predicted Secondary structure											.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		273	.	.	.	.	.	.	280	.								.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.												.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		595	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	N	V	R	E	L	E	N	V	I	E	R	A	V	L	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Y	S	G	A	D	I	S	I	I	V	R	D	A	L	M	Q	P
Template Known Secondary structure		T															T
Template Predicted Secondary structure
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions