Job Description P19323 Confidence 99.62% Date Thu Jan 5 11:37:18 GMT 2012 Rank 53 Aligned Residues 205 % Identity 20% Template c1nsfA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor; PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf) Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.									400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.
Query Sequence		F	G	E	I	I	G	R	S	E	A	M	Y	S	V	L	K	Q	V	E	M	V	A	.	.	.	.	.	.	.	.	Q	S	D	S	T	V	L	I	L	G	E	T	G	T	G	K	E	L	I	A	R	A	I	H	N	L	S	G	R	N	N	R	R	M	V	K	M	N	C	A	A	M	P	A	G	L	L	E	S	D
Query Conservation																								.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.																												.	.	.
Template Conservation																																																											.	.	.
Template Sequence		M	N	G	I	I	K	W	G	D	P	V	T	R	V	L	D	D	G	E	L	L	V	Q	Q	T	K	N	S	D	R	T	P	L	V	S	V	L	L	E	G	P	P	H	S	G	K	T	A	L	A	A	K	I	A	E	E	S	.	.	.	N	F	P	F	I	K	I	C	S	P	D	K	M	I	G	F	S	E	T	A
Template Known Secondary structure		T	T						S																					S	S		S									S	T	T	S	S													.	.	.			S							G	G	G	S	T	T
Template Predicted Secondary structure																																																											.	.	.
Template SS confidence
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560				.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580
		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.											.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.
Query Sequence		L	F	G	H	E	R	G	A	F	T	G	A	S	A	Q	R	I	G	R	F	E	L	A	D	K	S	S	L	F	L	D	E	V	G	D	M	P	.	.	.	.	.	.	.	.	.	.	L	E	L	Q	P	K	L	L	R	V	L	Q	E	Q	E	F	E	R	L	G	S	N	K	I	I	Q	T	D	V	R	L	I	A
Query Conservation																																							.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.
Template Sequence		K	C	Q	A	M	K	K	I	F	D	D	A	Y	K	S	.	.	.	.	.	.	.	.	Q	L	S	C	V	V	V	D	D	I	E	R	L	L	D	Y	V	P	I	G	P	R	F	S	N	L	V	L	Q	A	L	L	V	L	L	K	K	.	.	.	.	.	.	.	.	A	P	P	Q	G	R	K	L	L	I	I	G
Template Known Secondary structure															T	S	.	.	.	.	.	.	.	.	S													T	T		B	T	T	T	T	B													T	T		.	.	.	.	.	.	.	.			S	T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.
Template SS confidence
		581	.	.	.	.	.	.	.	.	590	.	.	.	.	.									.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.									.	.	.	.	.	.	.	640	.	.	.	.
		520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	N	R	D	L	K	K	M	V	A	D	R	E	F	R	S	D	L	Y	Y	R	L	N	V	F	P	I	H	L	P	P	L	R	E	R	P	E	D	I	P	L	L	A	K	A	F	T	F	K	I	A	R	R	L	G	R	N	I	D	S	I	P	A	E	T	L	R	T	L	S	N	M	E	W	P	G	N	V	R
Query Conservation
Alig confidence						.	.																.	.	.	.	.													.	.	.	.	.	.	.	.	.
Template Conservation						.	.																.	.	.	.	.													.	.	.	.	.	.	.	.	.
Template Sequence		T	T	S	R	.	.	K	D	V	L	Q	E	M	E	M	L	N	A	F	S	T	.	.	.	.	.	T	I	H	V	P	N	I	A	T	G	E	Q	.	.	.	.	.	.	.	.	.	L	L	E	A	L	E	L	L	G	N	F	K	D	K	E	R	T	T	I	A	Q	Q	V	K	G	K	K	V	W	I	G	I	K
Template Known Secondary structure				S		.	.							T	T	G	G	G	T	S	S		.	.	.	.	.													.	.	.	.	.	.	.	.	.									T		S													T	T	S
Template Predicted Secondary structure						.	.																.	.	.	.	.													.	.	.	.	.	.	.	.	.
Template SS confidence
		645	.	.	.			.	650	.	.	.	.	.	.	.	.	.	660	.	.	.						.	.	.	.	.	.	670	.	.	.	.	.										.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.
		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	E	N	V	I	E	R	A	V	L	L	T	R	G	N	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	L	M	L	I	E	M	S	L	Q	M	D	P	E	Y	R	V
Template Known Secondary structure											T	T	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		709	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions