Job Description P46890 Confidence 100.00% Date Thu Jan 5 12:04:38 GMT 2012 Rank 8 Aligned Residues 437 % Identity 16% Template d1zlqa1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.80

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		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	L	R	I	P	Y	Y	R	P	L	E	P	L	Q	P	G	F	L	P	G	R	A	E	Q	H	L	A	G	Q	I	F	S	G	L	T	R	F	D	N	N	T	Q	R	P	I	G	D	L	A	H	H	W	E	T	S	T	D	G	L	R	W	D	F	Y	L	R	S	T	L	H	W	H	N	G	D	A	V	K	A
Query Conservation
Alig confidence																							.																				.
Template Conservation																							.																				.
Template Sequence		D	E	I	T	T	A	W	P	V	N	V	G	P	L	N	P	H	L	Y	T	P	.	N	Q	M	F	A	Q	S	M	V	Y	E	P	L	V	K	Y	Q	A	D	.	G	S	V	I	P	W	L	A	K	S	W	T	H	S	E	D	G	K	T	W	T	F	T	L	R	D	D	V	K	F	S	N	G	E	P	F	D	A
Template Known Secondary structure									S	S				S			T	T			T	T	.	S												S					T	T	.	S					S	S								T	T	S									S	S		B		T	T	S		B
Template Predicted Secondary structure																							.																				.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.				.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260													.	.	.	.	.
Predicted Secondary structure																	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	H	L	H	Q	R	L	L	M	L	L	Q	L	P	A	.	.	.	L	D	Q	L	F	I	S	V	K	R	I	E	V	T	H	P	Q	C	L	T	F	F	L	H	R	P	D	Y	W	L	A	H	R	L	A	S	Y	C	S	H	L	A	H	P	Q	.	.	.	.	.	.	.	.	.	.	.	.	F	P	L	I	G
Query Conservation																	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	A	A	A	E	N	F	R	A	V	L	D	N	R	Q	R	H	A	W	L	E	L	A	N	Q	I	V	D	V	K	A	L	S	K	T	E	L	Q	I	T	L	K	S	A	Y	Y	P	F	L	Q	E	L	A	L	P	R	P	F	R	F	I	A	P	S	Q	F	K	N	H	E	T	M	N	G	I	K	A	P	I	G
Template Known Secondary structure													T	T	G	G	G	G	T	T	S	T											S	S	S	S							S	S			T	T						T	S	S	S	S	S					G	G	G			T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		266	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.					.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure												.																																																.	.	.	.												.	.	.	.	.	.	.
Query SS confidence												.																																																.	.	.	.												.	.	.	.	.	.	.
Query Sequence		T	G	P	F	R	L	T	Q	F	T	.	A	E	L	V	R	L	E	S	H	D	Y	Y	H	L	R	H	P	L	L	K	A	V	E	Y	W	I	T	P	P	L	F	E	K	D	L	G	T	S	C	R	H	P	V	Q	I	T	I	.	.	.	.	G	K	P	E	E	L	Q	R	V	S	Q	.	.	.	.	.	.	.
Query Conservation												.																																																.	.	.	.												.	.	.	.	.	.	.
Alig confidence												.																																																.	.	.	.												.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	G	P	W	I	L	Q	E	S	K	L	N	Q	Y	D	V	F	V	R	N	E	N	Y	W	G	E	K	P	A	I	K	K	I	T	F	N	V	I	P	D	P	T	T	R	A	V	A	F	E	T	G	D	I	D	L	L	Y	G	N	E	G	L	L	P	L	D	T	F	A	R	F	S	Q	N	P	A	Y	H	T	Q
Template Known Secondary structure		S	S	S								T	T	T								T	T		S	S				S																					T	T	S		S					S	T	T	S	S												T	T	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.			.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.																												.	.
Query SS confidence																																																			.	.																												.	.
Query Sequence		V	S	S	G	I	S	L	G	F	C	Y	L	T	L	R	K	S	P	R	L	S	L	W	Q	A	R	K	V	I	S	I	I	H	Q	S	G	L	L	Q	T	L	E	V	G	E	N	L	I	T	.	.	A	S	H	A	L	L	P	G	W	T	I	P	H	W	Q	V	P	D	E	V	K	L	P	K	T	L	T	.	.
Query Conservation																																																			.	.																												.	.
Alig confidence																																																			.	.																												.	.
Template Conservation
Template Sequence		L	S	Q	P	I	E	T	V	M	L	A	L	N	T	A	K	A	P	T	N	E	L	A	V	R	E	A	L	N	Y	A	V	N	K	K	S	L	I	D	N	A	L	Y	G	T	Q	Q	V	A	D	T	L	F	A	P	S	V	P	Y	A	N	L	G	L	K	P	S	Q	Y	D	P	Q	K	A	K	A	L	L	E	K
Template Known Secondary structure															T	T	S	T	T	T	T	S																					S	T	T		S					S	S	S		T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
																									410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	Y	H	L	P	I	E	L	H	T	M	A	E	R	L	Q	A	T	L	A	A	E	G	C	E	L	T	I	I	F	H	N	A	K	N	W	D	D	T	T	L	Q	A	H	A	D	L	M	M	G	D	R	L	I	G	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	W	T	L	P	A	G	K	D	I	R	E	K	N	G	Q	P	L	R	I	E	L	S	F	I	G	T	D	A	L	S	K	S	M	A	E	I	I	Q	A	D	M	R	Q	I	G	A	D	V	S	L	I	G	E	E	E	S	S	I	Y	A	R	Q	R	D	G	R	F	G	M	I	F	H	R	T	W	G	A	P
Template Known Secondary structure		T	T		B			T	T		S	S				T	T											T	T																	T	T	T																				T			S									T	T
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.			.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		A	P	E	Y	T	L	E	Q	W	L	R	C	D	P	L	W	.	.	P	H	V	F	D	A	P	A	Y	A	H	L	Q	S	T	L	D	A	V	Q	I	M	P	D	E	E	N	R	F	N	A	L	K	A	V	F	S	Q	L	M	T	D	A	T	L	T	P	L	F	N	Y	H	Y	R	I	S	A	P	P	G	V	N
Query Conservation																		.	.
Alig confidence																		.	.
Template Conservation
Template Sequence		Y	D	P	H	A	F	L	S	S	M	R	V	P	S	H	A	D	F	Q	A	Q	Q	G	L	A	D	K	P	L	I	D	K	E	I	G	E	V	L	A	T	H	D	E	T	Q	R	Q	A	L	Y	R	D	I	L	T	R	L	H	D	E	A	V	Y	L	P	I	S	Y	I	S	M	M	V	V	S	K	P	E	L	G
Template Known Secondary structure		T	T	T						G	G	G		T	T	S							T	T		T	T																																		T	T																G	G	G
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
		545	.	.	.	.	550	.	.	.		.	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		G	V	R	L	T	P	R	G	W	.	F	E	F	T	E	A
Query Conservation											.
Alig confidence											.
Template Conservation
Template Sequence		N	I	P	Y	A	P	I	A	T	E	I	P	F	E	Q	I
Template Known Secondary structure							S	S	T	T				G	G	G
Template Predicted Secondary structure
Template SS confidence
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.