Job Description P46890 Confidence 100.00% Date Thu Jan 5 12:04:38 GMT 2012 Rank 7 Aligned Residues 439 % Identity 16% Template d1jeta_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.20

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		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	P	T	L	R	I	P	Y	Y	R	P	L	E	P	L	Q	P	G	F	L	P	G	R	A	E	Q	H	L	A	G	Q	I	F	S	G	L	T	R	F	D	N	N	T	Q	R	P	I	G	D	L	A	H	H	W	E	T	S	T	D	G	L	R	W	D	F	Y	L	R	S	T	L	H	W	H	N	G	D	A	V
Query Conservation
Alig confidence																																													.													.
Template Conservation																																													.													.
Template Sequence		D	K	Q	T	L	V	R	N	N	G	S	E	V	Q	S	L	D	P	H	K	I	E	G	V	P	E	S	N	V	S	R	D	L	F	E	G	L	L	I	S	D	V	E	.	G	H	P	S	P	G	V	A	E	K	W	E	.	N	K	D	F	K	V	W	T	F	H	L	R	E	N	A	K	W	S	D	G	T	P	V
Template Known Secondary structure		S	S								S	S			S		S	S	T	T	S			S														S					T	T	.						S	S						.			T	T	T								T	T		B		T	T	S		B
Template Predicted Secondary structure																																													.													.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.																					.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	A	S	H	L	H	Q	R	L	L	M	L	L	Q	L	P	A	L	D	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	F	I	S	V	K	R	I	E	V	T	H	P	Q	C	L	T	F	F	L	H	R	P	D	Y	W	L	A	H	R	L	A	S	Y	C	S	H	L	A	H
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	A	H	D	F	V	Y	S	W	Q	R	L	A	D	P	N	T	A	S	P	Y	A	S	Y	L	Q	Y	G	H	I	A	N	I	D	D	I	I	A	G	K	K	P	A	T	D	L	G	V	K	A	L	D	D	H	T	F	E	V	T	L	S	E	P	V	P	Y	F	Y	K	L	L	V	H	P	S	V	S	P	V	P
Template Known Secondary structure																G	G	G			T	T	T	T					T	T	B	T	T						T	T	S	S		G	G	G	S	S						T	T						B	S	S			T	T					T	T	S	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		259													260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.																		.														.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.																		.														.
Query Sequence		P	.	.	.	.	.	.	.	.	.	.	.	.	Q	F	P	L	I	G	T	G	P	F	R	L	T	Q	F	T	A	.	E	L	V	R	L	E	S	H	D	Y	Y	H	L	.	R	H	P	L	L	K	A	V	E	Y	W	I	T	P	P	L	F	E	K	D	L	G	T	S	C	R	H	P	V	Q	I	T	I	G	K
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.																		.														.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.																		.														.
Template Conservation
Template Sequence		K	S	A	V	E	K	F	G	D	K	W	T	Q	P	A	N	I	V	T	N	G	A	Y	K	L	K	N	W	V	V	N	E	R	I	V	L	E	R	N	P	Q	Y	W	D	N	A	K	T	V	I	N	Q	V	T	Y	L	P	I	S	S	E	V	T	D	V	N	R	Y	R	S	G	E	I	D	M	T	Y	N	N	M
Template Known Secondary structure									G	G	G	T	T	S	T	T	T					S	S								T	T	T								T	T	S	T	T	G	G	G																							T	T	S		S	B			S
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		325									.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.
Query Sequence		P	.	.	.	.	.	.	.	.	E	E	L	Q	R	V	S	Q	V	S	S	G	I	S	L	G	F	C	Y	L	T	L	R	K	S	P	R	L	S	L	W	Q	A	R	K	V	I	S	I	I	H	Q	S	G	L	L	Q	T	L	E	V	G	E	N	L	I	T	A	S	H	A	L	L	P	G	W	T	I	P	H	W
Query Conservation			.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.																																																								.	.
Template Conservation																																																																		.	.
Template Sequence		P	I	E	L	F	Q	K	L	K	K	E	I	P	N	E	V	R	V	D	P	Y	L	C	T	Y	Y	Y	E	I	N	N	Q	K	A	P	F	N	D	V	R	V	R	T	A	L	K	L	A	L	D	R	D	I	I	V	N	K	V	K	N	Q	G	D	L	.	.	P	A	Y	S	Y	T	P	P	Y	T	D	G	A	K
Template Known Secondary structure			T	T	T								S	G	G	G																T	T	S	T	T	T	T	S											S								T	T	T		S	S			.	.			S	S	S	S		T	T	S	T	T
Template Predicted Secondary structure																																																																		.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.			.	.	.	.	.	.	.	320	.	.	.	.	.	.
		397	.	.	400																								.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Query Sequence		Q	V	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	K	L	P	K	T	L	T	L	V	Y	H	L	P	I	E	L	H	T	M	A	E	R	L	Q	A	T	L	.	A	A	E	G	C	E	L	T	I	I	F	H	N	A	K	N	W	D	D	T	T	L	Q
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation
Template Sequence		L	V	E	P	E	W	F	K	W	S	Q	Q	K	R	N	E	E	A	K	K	L	L	A	E	A	G	F	T	A	D	K	P	L	T	F	D	L	L	Y	N	T	S	D	L	H	K	K	L	A	I	A	V	A	S	I	W	K	K	N	L	G	V	N	V	N	L	E	N	Q	E	W	K	T	F	L	D	T	R	H	Q
Template Known Secondary structure										S																T	T			S	S	S										S
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	A	D	L	M	M	G	D	R	L	I	G	E	A	P	E	Y	T	L	E	Q	W	L	R	C	D	P	L	W	P	H	V	F	D	A	P	A	Y	A	H	L	Q	S	T	L	D	A	V	Q	I	M	P	D	E	E	N	R	F	N	A	L	K	A	V	F	S	Q	L	M	T	D	A	T	L	T	P	L	F	N
Query Conservation
Alig confidence																																.	.
Template Conservation																																.	.
Template Sequence		G	T	F	D	V	A	R	A	G	W	C	A	D	Y	N	E	P	T	S	F	L	N	T	M	L	S	D	S	S	N	.	.	N	T	A	H	Y	K	S	P	A	F	D	K	L	I	A	D	T	L	K	V	A	D	D	T	Q	R	S	E	L	Y	A	K	A	E	Q	Q	L	D	K	D	S	A	I	V	P	V	Y	Y
Template Known Secondary structure		T			S									S	S	S	S	T					G	G	G	S	T	T		T	T	.	.		T	T														T	T	T	S																				T	T
Template Predicted Secondary structure																																.	.
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.			.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
		533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.		550	.	.	.	.	.	.	.	.	.	560	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		Y	H	Y	R	I	S	A	P	P	G	V	N	G	V	R	L	T	.	P	R	G	W	F	E	F	T	E	A	W	L	P	A
Query Conservation																			.
Alig confidence																			.
Template Conservation
Template Sequence		Y	V	N	A	R	L	V	K	P	W	V	G	G	Y	T	G	K	D	P	L	D	N	I	Y	V	K	N	L	Y	I	I	K
Template Known Secondary structure								B		T	T			S						T	T					G	G	G				B
Template Predicted Secondary structure
Template SS confidence
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.