Job Description P46890 Confidence 100.00% Date Thu Jan 5 12:04:38 GMT 2012 Rank 1 Aligned Residues 442 % Identity 17% Template c3tpaA_ PDB info PDB header:heme binding protein Chain: A: PDB Molecule:heme-binding protein a; PDBTitle: structure of hbpa2 from haemophilus parasuis Resolution 2.00 Å

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		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																												.																																																			.	.	.
Query SS confidence																												.																																																			.	.	.
Query Sequence		P	T	L	R	I	P	Y	Y	R	P	L	E	P	L	Q	P	G	F	L	P	G	R	A	E	Q	H	.	L	A	G	Q	I	F	S	G	L	T	R	F	D	N	N	T	Q	R	P	I	G	D	L	A	H	H	W	E	T	S	T	D	G	L	R	W	D	F	Y	L	R	S	T	L	H	W	H	N	G	D	.	.	.
Query Conservation																												.																																																			.	.	.
Alig confidence																												.																																																			.	.	.
Template Conservation
Template Sequence		N	T	L	V	N	C	I	A	T	A	P	M	K	L	S	P	A	I	T	N	D	A	N	D	F	N	A	S	S	Q	Q	V	Y	N	R	L	V	E	F	K	A	G	K	I	E	V	E	P	G	L	A	E	R	W	E	I	S	E	D	G	L	V	Y	T	F	Y	L	R	Q	N	V	K	F	H	S	N	K	T	F	S
Template Known Secondary structure									S	S			S		S		G	G	G		S	S	G	G	G	G	G	G	T								S					T	T	S	S	S				S	S								T	T	S									S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
					197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.															.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	A	V	K	A	S	H	L	H	Q	R	L	L	M	L	L	Q	L	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	Q	L	F	I	S	V	K	R	I	E	V	T	H	P	Q	C	L	T	F	F	L	H	R	P	D	Y	W	L	A	H	R	L	A	S	Y	C	S	H	L	A	H	P
Query Conservation		.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	T	R	P	L	N	A	D	D	V	V	F	S	F	Q	R	Q	A	D	K	N	H	P	Y	H	N	V	S	A	G	T	Y	F	Y	F	N	W	M	N	L	P	S	I	L	K	S	V	E	K	V	D	D	Y	T	V	K	I	T	L	N	K	P	N	T	P	F	I	T	T	V	A	M	D	F	L	S	I	Y	S	K
Template Known Secondary structure			S	S																	T	T	S	T	T	T	T	G	G	G									T	T													T	T							S	S			T	T					T	T	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
																	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	F	P	L	I	G	T	G	P	F	R	L	T	Q	F	T	.	A	E	L	V	R	L	E	S	H	D	Y	Y	H	L	R	H	P	L	L	K	A	V	E	Y	W	I	T	P	P	L	F	E	K	D	L	G	T	S	C	R	H	P	V	Q	I	T	I	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation
Template Sequence		E	Y	A	D	Q	L	L	A	Q	G	K	P	E	T	L	D	Q	Q	P	I	G	T	G	P	F	I	F	Q	T	N	Q	T	D	H	A	V	R	Y	T	A	N	V	D	Y	W	K	G	K	A	D	I	E	R	L	I	F	S	I	T	P	D	A	G	T	R	Y	A	K	L	K	A	G	E	C	D	V	I	D	F	P
Template Known Secondary structure										T	T		T	T					S				S	S	S					S	S			T	T								T	T		T	T				S		S																			T	T	S		S			S	S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		324	.	.	.	.	.	330	.	.	.								.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.			.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.																																																		.	.
Query SS confidence												.	.	.	.	.	.	.																																																		.	.
Query Sequence		K	P	E	E	L	Q	R	V	S	Q	.	.	.	.	.	.	.	V	S	S	G	I	S	L	G	F	C	Y	L	T	L	R	K	S	P	R	L	S	L	W	Q	A	R	K	V	I	S	I	I	H	Q	S	G	L	L	Q	T	L	E	V	G	E	N	L	I	T	.	.	A	S	H	A	L	L	P	G	W	T	I	P
Query Conservation												.	.	.	.	.	.	.																																																		.	.
Alig confidence												.	.	.	.	.	.	.																																																		.	.
Template Conservation
Template Sequence		N	I	S	D	I	A	Q	M	K	K	D	P	Q	I	N	L	L	E	R	E	G	L	N	L	A	Y	I	G	L	N	T	T	K	P	E	L	N	N	V	K	V	R	Q	A	L	H	H	A	T	D	K	K	A	I	V	D	A	V	Y	Q	G	G	G	T	V	A	T	N	P	F	P	D	A	V	L	G	Y	N	P	H
Template Known Secondary structure										T	T		T	T									S									T	T	S	T	T	T	T	S										T												T	T	S					S	S	S	S		T	T	S	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.																		.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	W	Q	V	P	D	E	V	K	L	P	K	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	V	Y	H	L	P	I	E	L	H	T	M	A	E	R	L	Q	A	T	L	A	A	E	G	C	E	L	T	I	I	F	H	N	A	K	N	W	D	D	T	T	L	Q	A	H	A	D	L
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	Q	Y	E	F	N	L	E	K	A	K	A	L	L	A	E	A	G	Y	P	N	G	F	E	T	E	I	W	V	Q	P	V	V	R	P	S	N	P	N	P	R	R	T	A	E	I	I	Q	A	D	W	A	K	I	G	V	K	A	K	L	V	T	H	E	W	A	D	F	N	K	R	T	R	E	G	E	F	A	A
Template Known Secondary structure																			T	T		T	T										S	S		B	T	T	B	S																T	T																			T	T			S
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.		.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		M	M	G	D	R	L	I	G	E	A	P	E	Y	T	L	E	Q	W	L	R	C	D	P	L	W	.	P	H	V	F	D	A	P	A	Y	A	H	L	Q	S	T	L	D	A	V	Q	I	M	P	D	E	E	N	R	F	N	A	L	K	A	V	F	S	Q	L	M	T	D	A	T	L	T	P	L	F	N	Y	H	Y	R
Query Conservation																											.
Alig confidence																											.
Template Conservation
Template Sequence		G	T	Y	G	W	T	S	R	N	G	D	P	D	N	F	L	F	P	L	F	S	Q	A	N	I	P	G	T	N	Y	S	R	W	T	D	E	K	F	E	A	L	L	A	S	A	A	Q	I	Q	D	T	Q	T	R	A	K	L	Y	Q	Q	A	V	E	I	F	Q	Q	N	S	P	I	I	P	F	A	H	S	I	N	Y
Template Known Secondary structure									S	S			T										G	G	G	T	T	T	T		T	T																T																							S
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
		537	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	A	P	P	G	V	N	G	V	R	L	T	P	R	G	W	F	E	F	T	E	A	W	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	P	L	N	K	R	V	Q	G	F	V	Q	N	P	F	G	Y	T	A	F	Y	G	V	S	L	K
Template Known Secondary structure						T	T			S					T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.