Job Description P46890 Confidence 100.00% Date Thu Jan 5 12:04:38 GMT 2012 Rank 10 Aligned Residues 437 % Identity 15% Template c3t66A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nickel abc transporter (nickel-binding protein); PDBTitle: crystal structure of nickel abc transporter from bacillus halodurans Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	T	L	R	I	P	Y	Y	R	P	L	E	P	L	Q	P	G	F	L	P	G	R	A	E	Q	H	L	A	G	Q	I	F	S	G	L	T	R	F	D	N	N	T	Q	R	P	I	G	D	L	A	H	H	W	E	T	S	T	D	G	L	R	W	D	F	Y	L	R	S	T	L	H	W	H	N	G	D	A	V	K
Query Conservation
Alig confidence																			.	.																																					.
Template Conservation																			.	.																																					.
Template Sequence		E	K	H	I	H	F	L	F	N	V	S	T	N	S	L	D	P	.	.	H	V	D	M	T	Y	I	P	V	R	A	G	I	T	E	T	L	V	R	V	D	E	E	N	V	T	I	A	P	W	L	A	E	S	W	D	.	S	T	D	G	Q	H	W	T	I	K	L	R	E	D	V	T	F	Q	N	G	K	E	M	D
Template Known Secondary structure										S				S				T	.	.	T	T		S	S						T	T	S		B		S					T	T	T		S				S	S						.		S	S	S	S								S	S		B		T	T	S		B
Template Predicted Secondary structure																			.	.																																					.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260						.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.
Query Sequence		A	S	H	L	H	Q	R	L	L	M	L	L	Q	L	P	A	L	D	Q	L	F	I	S	V	K	R	I	E	V	T	H	P	Q	C	L	T	F	F	L	H	R	P	D	Y	W	L	A	H	R	L	A	S	Y	C	S	H	L	A	H	P	Q	.	.	.	.	.	F	P	L	I	G	T	G	P	F	R	L	T	Q	F
Query Conservation																																																															.	.	.	.	.
Alig confidence																															.																																.	.	.	.	.
Template Conservation																															.
Template Sequence		A	E	A	V	K	A	S	L	E	R	A	L	D	E	S	V	A	I	E	N	A	L	K	I	D	E	I	E	A	.	D	G	Y	T	L	H	I	T	T	K	E	P	F	P	E	F	I	S	E	L	V	N	P	N	V	S	I	I	D	V	T	E	E	D	F	T	N	H	P	V	G	T	G	P	F	A	L	E	S	F
Template Known Secondary structure														T	T																.		T	T							S	S			T	T	T	G	G	G	G	G	S	G	G	G		B	B		T	T	S			T	T	T				B	S	S	S
Template Predicted Secondary structure																															.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		275	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.								.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure					.																																																									.	.	.	.	.	.	.
Query SS confidence					.																																																									.	.	.	.	.	.	.
Query Sequence		T	A	E	.	L	V	R	L	E	S	H	D	Y	Y	H	L	R	H	P	L	L	K	A	V	E	Y	W	I	T	P	P	L	F	E	K	D	L	G	T	S	C	R	H	P	V	Q	I	T	I	G	K	P	E	E	L	Q	R	V	S	Q	.	.	.	.	.	.	.	V	S	S	G	I	S	L	G	F	C	Y	L	T
Query Conservation					.																																																									.	.	.	.	.	.	.
Alig confidence					.																																																									.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	P	G	S	K	L	E	L	V	R	Y	D	E	Y	W	D	G	A	S	K	L	D	S	V	T	F	S	F	N	E	D	A	S	A	R	S	L	A	L	E	S	G	Q	A	D	I	V	Y	R	P	E	V	E	S	I	E	T	L	Q	A	N	E	G	I	M	V	E	A	T	E	T	F	R	T	H	N	L	T	M	N
Template Known Secondary structure			T	T	T								T	T		T	T				S		S																			T	T	S		S				S			T	T	T							S	T	T									S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.		.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	R	K	S	P	R	L	S	L	W	Q	A	R	K	V	I	S	I	I	H	Q	S	G	L	L	Q	T	L	E	V	G	E	N	L	I	T	A	S	.	H	A	L	L	P	G	W	T	I	P	H	W	Q	V	P	D	E	V	K	L	P	K	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																								.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	D	R	D	S	L	K	D	V	N	V	R	R	A	V	D	V	L	L	D	R	Q	E	I	V	D	T	I	M	L	G	Y	A	E	V	A	D	G	P	F	I	P	T	L	P	F	A	P	S	Y	E	K	K	E	T	G	T	D	I	A	I	Q	Y	L	E	E	A	G	Y	T	L	E	N	Q	M	Q	K	D	G	E
Template Known Secondary structure		T	T	S	T	G	G	G	S											S									T	T	T	T	S					S	S	S	S		T	T	S	T	T										S												T										T	T
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
							409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	T	L	V	Y	H	L	P	I	E	L	H	T	M	A	E	R	L	Q	A	T	L	A	A	E	G	C	E	L	T	I	I	F	H	N	A	K	N	W	D	D	T	T	L	Q	A	H	A	D	L	M	M	G	D	R	L	I	G	E	A	P	E	Y	T	L	E	Q	W	L	R	C	D	P	L	W	P
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																																																																									.
Template Conservation																																																																															.
Template Sequence		P	L	H	F	T	V	L	T	Y	G	S	R	A	E	L	P	L	I	A	Q	V	F	Q	S	N	A	K	Q	I	G	I	E	V	E	I	R	Q	I	E	V	P	E	E	Y	M	A	S	N	R	D	W	D	L	I	T	Y	S	N	V	T	S	P	R	G	D	A	G	Y	Y	L	N	A	T	Y	H	P	T	.	G	A
Template Known Secondary structure											S	S	S	T	T															T	T									S	S	S	T					T		T	T										S		T	T	S											S	T	T	.		T
Template Predicted Secondary structure																																																																															.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.		.	.
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.		.	.	.	.	.	.	.	550	.	.	.	.	.	.	.		.	.	560	.
Predicted Secondary structure																																																													.																.
Query SS confidence																																																													.																.
Query Sequence		H	V	F	D	A	P	A	Y	A	H	L	Q	S	T	L	D	A	V	Q	I	M	P	D	E	E	N	R	F	N	A	L	K	A	V	F	S	Q	L	M	T	D	A	T	L	T	P	L	F	N	Y	H	Y	R	I	S	A	P	P	G	.	V	N	G	V	R	L	T	P	R	G	W	F	E	F	T	.	E	A	W	L
Query Conservation																																																													.																.
Alig confidence																																																													.																.
Template Conservation
Template Sequence		L	N	F	S	S	V	N	D	P	E	L	T	G	I	I	D	E	L	N	R	T	V	D	Q	D	V	R	A	K	L	T	E	Q	A	A	A	Y	I	D	E	Q	K	I	H	S	F	L	I	H	P	S	A	V	V	A	Y	D	E	N	K	V	K	N	W	V	T	T	R	S	E	Y	Y	M	I	T	N	Q	L	D	V
Template Known Secondary structure		T			S																T																					T	T																T	T	T		B						S	S	S				S		T	T		B
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.