Job Description P46890 Confidence 100.00% Date Thu Jan 5 12:04:38 GMT 2012 Rank 16 Aligned Residues 428 % Identity 16% Template c3ry3B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:putative solute-binding protein; PDBTitle: putative solute-binding protein from yersinia pestis. Resolution 2.43 Å

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		122	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		T	L	R	I	P	Y	Y	R	P	L	.	E	P	L	Q	P	G	F	L	P	G	R	A	E	Q	H	L	A	G	Q	I	F	S	G	L	T	R	F	D	N	N	T	Q	R	P	I	G	D	L	A	H	H	W	E	T	S	T	D	G	L	R	W	D	F	Y	L	R	S	T	L	H	W	H	N	G	D	A	V	K	A
Query Conservation												.
Alig confidence												.																	.	.	.												.
Template Conservation																													.	.	.												.
Template Sequence		T	L	Q	L	A	I	G	D	E	P	T	E	G	F	D	P	X	L	G	W	S	H	G	S	Y	L	L	.	.	.	L	H	S	P	L	L	K	Q	N	E	D	.	F	S	W	D	S	L	L	L	S	Q	Y	Q	P	S	D	D	G	K	T	W	L	L	T	L	K	P	D	L	K	F	S	D	G	S	P	L	T	A
Template Known Secondary structure								S				S	S				G	G	G		S	S	S	S	T				.	.	.					S					T	T	.	S					S	S								T	T	S	S								T	T		B		T	T	S		B
Template Predicted Secondary structure																													.	.	.												.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.				.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260							.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.
Query Sequence		S	H	L	H	Q	R	L	L	M	L	L	Q	L	P	A	L	D	Q	L	F	I	S	V	K	R	I	E	V	T	H	P	Q	C	L	T	F	F	L	H	R	P	D	Y	W	L	A	H	R	L	A	S	Y	C	S	H	L	A	H	P	Q	.	.	.	.	.	.	F	P	L	I	G	T	G	P	F	R	L	T	Q	F
Query Conservation																																																														.	.	.	.	.	.
Alig confidence																		.	.	.																																										.	.	.	.	.	.
Template Conservation																		.	.	.
Template Sequence		K	D	V	A	F	T	Y	N	N	A	A	A	G	K	V	D	.	.	.	X	G	N	F	L	S	A	E	V	I	D	P	L	N	V	R	I	H	L	K	A	P	Q	S	T	F	V	N	V	L	G	S	L	G	I	V	S	A	D	K	Y	N	A	K	T	Y	A	Q	K	P	I	G	A	G	P	Y	R	L	V	S	F
Template Known Secondary structure												T				S		.	.	.		S	S									T	T							S	S			T	T						T	T	S					S	T	T			T	T	T	T	T	T	S				S	S	S
Template Predicted Secondary structure																		.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.				.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
			275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.																		.	.	.
Predicted Secondary structure		.																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	T	A	E	L	V	R	L	E	S	H	D	Y	Y	H	L	R	H	P	L	L	K	A	V	E	Y	W	I	T	P	P	L	F	E	K	D	L	G	T	S	C	R	H	P	V	Q	I	T	I	G	K	P	E	E	L	Q	R	V	S	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	S
Query Conservation		.																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																															.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.
Template Sequence		Q	P	G	Q	Q	X	I	V	E	A	N	P	Y	Y	A	G	N	K	N	D	F	D	K	L	I	F	V	F	L	D	E	.	D	S	A	F	A	A	A	Q	S	G	Q	L	G	V	V	R	I	P	P	S	X	A	V	G	S	V	N	N	X	K	L	W	V	R	P	S	V	E	N	R	G	I	V	F	P	T	T	P
Template Known Secondary structure			T	T	T								T	T		S	S				S		S										.									T	T			S						T	T	S						T	T								B											S
Template Predicted Secondary structure																																	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.		.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.																					.	.	.	.	.	.	.
Query SS confidence																																																						.																					.	.	.	.	.	.	.
Query Sequence		G	I	S	L	G	F	C	Y	L	T	L	R	K	S	P	R	L	S	L	W	Q	A	R	K	V	I	S	I	I	H	Q	S	G	L	L	Q	T	L	E	V	G	E	N	L	I	T	A	S	H	A	L	L	.	P	G	W	T	I	P	H	W	Q	V	P	D	E	V	K	L	P	K	T	L	.	.	.	.	.	.	.
Query Conservation																																																						.																					.	.	.	.	.	.	.
Alig confidence																																																						.																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	K	K	D	A	H	G	Y	P	I	G	N	D	V	T	A	D	V	A	I	R	R	A	I	N	Y	A	I	N	R	Q	L	L	A	D	Q	I	X	E	G	H	A	I	P	A	Y	T	G	V	Q	G	L	P	W	N	N	P	D	S	A	I	K	D	G	D	I	D	K	A	K	Q	I	L	E	Q	A	G	W	Q
Template Known Secondary structure		S					T	T	S						T	T	T	T	S																					S	T	T						S	S	T	T	T	T	S	T	T	S		T	T						S												T	T
Template Predicted Secondary structure
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
																			409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	V	Y	H	L	P	I	E	L	H	T	M	A	E	R	L	Q	A	T	L	A	A	E	G	C	E	L	T	I	I	F	H	N	A	K	N	W	D	D	T	T	L	Q	A	H	A	D	L	M	M	G	D	R	L	I	G	E	A	P	E	Y	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.
Template Conservation																																																												.	.	.
Template Sequence		L	N	S	Q	G	T	R	E	K	N	G	L	P	A	K	I	T	L	W	Y	T	S	G	D	T	T	R	R	D	L	A	Q	A	L	R	S	X	L	K	P	I	G	I	D	V	D	L	K	S	G	S	W	E	T	V	E	R	N	.	.	.	X	H	A	N	P	T	L	F	G	W	G	S	L	D	P	X	E	L	Y
Template Known Secondary structure				T	T	S	S				T	T											S	S																G	G	G	T																	.	.	.	T	T	T	S									S	S	T
Template Predicted Secondary structure																																																												.	.	.
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.				.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.							.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.
Query Sequence		L	E	Q	W	L	R	C	D	P	L	W	P	H	V	F	D	A	P	A	Y	A	H	L	Q	S	T	L	D	A	V	Q	I	M	P	D	E	E	N	R	F	N	A	L	K	A	V	F	.	.	.	.	.	.	S	Q	L	M	T	D	A	T	L	T	P	L	F	N	Y	H	Y	R	I	S	A	P	P	G	V	N	G
Query Conservation																																																	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.
Template Conservation
Template Sequence		H	H	Y	S	S	N	A	A	G	V	E	Y	Y	N	P	G	Y	Y	K	N	P	X	V	D	K	H	L	Q	Q	A	L	D	A	P	T	W	Q	Q	A	V	P	F	W	Q	Q	V	D	W	D	G	T	T	G	A	G	I	R	G	D	A	A	W	A	W	L	L	N	I	Q	H	T	Y	L	A	N	N	C	V	D	L
Template Known Secondary structure						G	G	G	T	T	S	T	T	S	S	T	T																		S	S										T	T	T			S	S			S	S	T	T	T	T																	T	T
Template Predicted Secondary structure
Template SS confidence
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
		546	.	.	.	550	.				.	.	.	.	.	.	.	.			560
Predicted Secondary structure								.	.	.									.	.
Query SS confidence								.	.	.									.	.
Query Sequence		V	R	L	T	P	R	.	.	.	G	W	F	E	F	T	E	A	.	.	W
Query Conservation								.	.	.									.	.
Alig confidence								.	.	.									.	.
Template Conservation
Template Sequence		G	K	G	T	P	E	I	H	G	S	W	S	L	L	N	S	I	D	S	W
Template Known Secondary structure					S		B		S	S	T	T	G	G	G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		501	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520