Job Description P46890 Confidence 99.89% Date Thu Jan 5 12:04:38 GMT 2012 Rank 20 Aligned Residues 192 % Identity 14% Template c3pamB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:transmembrane protein; PDBTitle: crystal structure of a domain of transmembrane protein of abc-type2 oligopeptide transport system from bartonella henselae str. houston-1 Resolution 2.31 Å

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		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	G	F	C	Y	L	T	L	R	K	S	P	R	L	S	L	W	Q	A	R	K	V	I	S	I	I	H	Q	S	G	L	L	Q	T	L	E	V	G	E	N	L	I	T	A	S	H	A	L	L	P	G	W	T	I	P	H	W	Q	V	P	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																												.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.
Template Sequence		D	I	X	G	F	V	F	N	T	R	R	T	L	F	K	D	K	R	V	R	Q	A	L	S	I	L	F	D	F	E	W	V	N	H	H	L	F	N	N	I	Y	T	.	.	R	T	E	G	Y	W	D	G	S	I	L	S	S	I	G	K	P	A	S	E	E	E	K	A	L	L	A	P	Y	P	D	A	V	L	P	E
Template Known Secondary structure										T	T	S	G	G	G	S	S																				T	T	T	T				.	.				S	S	S	T	T	S	T	T			S	S	S											T	T		T	T	S	S
Template Predicted Secondary structure																																												.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360			.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
																																						402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	L	P	K	T	L	T	L	V	Y	H	L	P	I	E	L	H	T	M	A	E	R	L	Q	A	T	L	A	A	E	G	C	E	L	T	I	I	F	H	N	A	K	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	X	D	G	S	W	R	I	S	K	D	R	L	N	A	Q	K	A	W	K	L	L	Q	E	A	G	F	T	K	K	N	N	R	L	I	A	P	N	G	L	P	F	Q	F	E	I	X	T	Q	S	L	E	E	E	K	V	A	L	A	F	Q	S	N	L	S	R	L	G	I	H	A	E	I	R	T	V	D	D	S	Q
Template Known Secondary structure					T																					T	T					T	T					T	T	S		B								S	S																T	T	T
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
		446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.				.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.
Predicted Secondary structure																																									.	.	.
Query SS confidence																																									.	.	.
Query Sequence		W	D	D	T	T	L	Q	A	H	A	D	L	M	M	G	D	R	L	I	G	E	A	P	E	Y	T	L	E	Q	W	L	R	C	D	P	L	W	P	H	.	.	.	V	F	D	A	P	A	Y	A	H	L	Q	S	T	L	D	A	V	Q	I	M	P	D	E	E	N	R	F	N	A	L	K	A	V	F	S	Q	L	M
Query Conservation																																									.	.	.
Alig confidence																																									.	.	.
Template Conservation
Template Sequence		Y	Q	N	R	L	G	X	F	N	Y	D	X	I	I	G	K	L	K	N	S	L	S	P	G	N	E	Q	I	N	R	W	S	S	A	S	R	N	L	K	G	S	F	N	F	S	G	A	S	D	P	A	I	D	A	X	I	T	A	I	L	D	A	H	S	Q	V	D	F	I	A	A	V	R	A	L	D	R	I	L	I
Template Known Secondary structure									T			S										S	S			T	T											T		T	T		S		T	T																			S
Template Predicted Secondary structure
Template SS confidence
		483	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
		523	.	.	.	.	.	.	530	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	A	T	L	T	P	L	F	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	G	S	Y	Y	I	P	L	Y	H
Template Known Secondary structure				T
Template Predicted Secondary structure
Template SS confidence
		563	.	.	.	.	.	.	570	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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