Job Description P46890 Confidence 99.90% Date Thu Jan 5 12:04:38 GMT 2012 Rank 19 Aligned Residues 194 % Identity 13% Template c3lvuB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding protein; PDBTitle: crystal structure of abc transporter, periplasmic substrate-binding2 protein spo2066 from silicibacter pomeroyi Resolution 1.79 Å

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		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	G	F	C	Y	L	T	L	R	K	S	P	R	L	S	L	W	Q	A	R	K	V	I	S	I	I	H	Q	S	G	L	L	Q	T	L	E	V	G	E	N	L	I	T	A	S	H	A	L	L	P	G	W	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	X	T	G	F	V	I	N	T	R	R	A	P	F	D	D	W	R	L	R	E	A	L	L	L	A	F	N	F	E	F	I	N	D	T	V	T	G	G	V	X	P	R	I	T	S	Y	F	S	G	T	D	L	A	Y	R	P	G	T	A	S	G	R	E	A	E	L	L	A	P	F	A	A	D	L	P	P	G	T	L
Template Known Secondary structure										T	T	S	T	T	T	T	S																						T	T		S					S	T	T	T	T	S	T	T	S			S	S	S										G	G	G	T	T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
																																		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	H	W	Q	V	P	D	E	V	K	L	P	K	T	L	T	L	V	Y	H	L	P	I	E	L	H	T	M	A	E	R	L	Q	A	T	L	A	A	E	G	C	E	L	T	I	I	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	G	Y	A	L	P	Q	G	D	G	T	A	R	N	R	T	N	L	R	R	A	A	Q	F	L	E	Q	A	G	F	R	I	E	Q	G	Q	L	L	G	P	D	G	A	P	L	A	L	R	F	L	L	R	Q	G	D	S	D	X	Q	T	V	L	E	I	Y	T	R	A	L	E	R	L	G	I	A	A	Q	I	E	K
Template Known Secondary structure											S	S	S	S															T	T					T	T					T	T	S	S	B									T	T																		T	T
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.				.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.
Query SS confidence																																														.	.	.
Query Sequence		H	N	A	K	N	W	D	D	T	T	L	Q	A	H	A	D	L	M	M	G	D	R	L	I	G	E	A	P	E	Y	T	L	E	Q	W	L	R	C	D	P	L	W	P	H	.	.	.	V	F	D	A	P	A	Y	A	H	L	Q	S	T	L	D	A	V	Q	I	M	P	D	E	E	N	R	F	N	A	L	K	A	V
Query Conservation																																														.	.	.
Alig confidence																																														.	.	.
Template Conservation
Template Sequence		V	D	N	A	Q	Y	T	A	R	V	A	E	L	D	F	D	L	T	P	F	R	R	D	L	S	L	S	P	G	N	E	Q	R	L	Y	W	G	S	H	S	A	G	Q	P	G	T	R	N	L	X	G	A	A	S	P	A	I	D	A	X	I	D	R	X	L	A	A	T	T	E	D	E	L	T	A	A	T	R	A	L
Template Known Secondary structure													T	T			S										S	S			T								G	G	G	T	T		T	T		S		T	T																			S
Template Predicted Secondary structure
Template SS confidence
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
		518	.	520	.	.	.	.	.	.	.	.	.	530	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	Q	L	M	T	D	A	T	L	T	P	L	F	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	R	V	L	T	A	G	R	Y	V	I	P	I	W	R
Template Known Secondary structure								T	T
Template Predicted Secondary structure
Template SS confidence
		554	.	.	.	.	.	560	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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