Job Description P46890 Confidence 79.14% Date Thu Jan 5 12:04:38 GMT 2012 Rank 189 Aligned Residues 96 % Identity 16% Template c2k9sA_ PDB info PDB header:transcription Chain: A: PDB Molecule:arabinose operon regulatory protein; PDBTitle: solution structure of dna binding domain of e. coli arac Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	R	L	N	Q	Y	Q	R	L	W	Q	P	S	A	G	K	P	Q	T	V	T	V	S	E	L	A	E	R	C	F	C	S	E	R	H	V	R	T	L	L	R	Q	A	Q	E	A	G	W	L	E	W	Q	A	Q	S	G	R	G	K	R	G	Q	L	R	F	L	V	T	P	E	S	L	R	N	A	M	M	E	Q	A
Query Conservation
Alig confidence																			.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	R	V	R	E	A	C	Q	Y	I	S	D	H	L	A	D	S	.	N	F	D	I	A	S	V	A	Q	H	V	C	L	S	P	S	R	L	S	H	L	F	R	Q	Q	L	G	I	S	V	L	S	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	D	Q	R	I	S	Q	A	K	L	L
Template Known Secondary structure														T	S	S		S	.	S										T	T	S														S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.																		.	.	.	.	.	.	.	60	.	.	.	.
		85	.	.	.			.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.												.
Query SS confidence						.	.												.
Query Sequence		L	E	T	G	.	.	K	Q	Q	D	V	L	E	L	A	Q	L	.	A	P	G	E	L	R	T	L	L	Q	P	F	M	G	G	Q	W	Q	N
Query Conservation						.	.												.
Alig confidence						.	.												.
Template Conservation
Template Sequence		L	S	T	T	R	M	P	I	A	T	V	G	R	N	V	G	F	D	D	Q	L	Y	F	S	R	V	F	K	K	C	T	G	A	S	P	S	E
Template Known Secondary structure																T	T																S	S
Template Predicted Secondary structure
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions