Job Description P46890 Confidence 100.00% Date Thu Jan 5 12:04:38 GMT 2012 Rank 17 Aligned Residues 428 % Identity 13% Template c2grvC_ PDB info PDB header:biosynthetic protein Chain: C: PDB Molecule:lpqw; PDBTitle: crystal structure of lpqw Resolution 2.40 Å

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		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.								.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																									.	.																		.	.	.	.	.	.	.															.
Query SS confidence																									.	.																		.	.	.	.	.	.	.															.
Query Sequence		T	L	R	I	P	Y	Y	R	P	L	E	P	L	Q	P	G	F	L	P	G	R	A	E	.	.	Q	H	L	A	G	Q	I	F	S	G	L	T	R	F	D	N	N	.	.	.	.	.	.	.	T	Q	R	P	I	G	D	L	A	H	H	W	E	T	.	S	T	D	G	L	R	W	D	F	Y	L	R	S	T	L	H
Query Conservation																									.	.																		.	.	.	.	.	.	.															.
Alig confidence																									.	.																		.	.	.	.	.	.	.															.
Template Conservation
Template Sequence		Q	I	I	M	A	I	D	S	I	G	P	G	F	N	P	H	L	L	S	D	Q	S	P	V	N	A	A	I	A	S	L	V	L	P	S	S	F	R	P	V	P	D	P	T	S	P	T	G	S	R	W	E	L	D	T	T	L	L	E	S	A	E	V	T	Q	E	N	P	F	T	V	T	Y	K	I	R	P	E	A	Q
Template Known Secondary structure								S				S		S		T	T	B	G	G	G		S											S			S							T	T	S	T	T	S							T	T	T									T	T	T	T								T	T		B
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.				.	.	.	.	.	.	.	260
Predicted Secondary structure																										.	.															.																								.	.	.									.	.	.	.	.
Query SS confidence																										.	.															.																								.	.	.									.	.	.	.	.
Query Sequence		W	H	N	G	D	A	V	K	A	S	H	L	H	Q	R	L	L	M	L	L	Q	L	P	A	.	.	L	D	Q	L	F	I	S	V	K	R	I	E	V	T	.	H	P	Q	C	L	T	F	F	L	H	R	P	D	Y	W	L	A	H	R	L	A	S	Y	.	.	.	C	S	H	L	A	H	P	Q	.	.	.	.	.
Query Conservation																										.	.															.																								.	.	.									.	.	.	.	.
Alig confidence																										.	.															.																								.	.	.									.	.	.	.	.
Template Conservation
Template Sequence		W	T	D	N	A	P	I	A	A	D	D	Y	W	Y	L	W	R	Q	M	V	S	Q	P	G	V	V	D	P	A	G	Y	D	L	I	T	G	V	Q	S	V	E	G	G	K	Q	A	V	V	T	F	S	Q	P	Y	P	A	W	R	E	L	F	N	D	I	L	P	A	H	I	V	K	D	I	P	G	G	F	G	A	G
Template Known Secondary structure			T	T	S		B																	T	T	B	S			T	T	G	G	G								T	T	T	T							S	S			T	T	G	G	G	S	S		S								T	T	S	T	T					T
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
					261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure		.	.	.																	.	.																																														.													.
Query SS confidence		.	.	.																	.	.																																														.													.
Query Sequence		.	.	.	F	P	L	I	G	T	G	P	F	R	L	T	Q	F	T	A	.	.	E	L	V	R	L	E	S	H	D	Y	Y	H	L	R	H	P	L	L	K	A	V	E	Y	W	I	T	P	P	L	F	E	K	D	L	G	T	S	C	R	H	P	V	Q	I	T	.	I	G	K	P	E	E	L	Q	R	V	S	Q	.
Query Conservation		.	.	.																	.	.																																														.													.
Alig confidence		.	.	.																	.	.																																														.													.
Template Conservation
Template Sequence		L	A	R	A	M	P	V	T	G	G	Q	F	R	V	E	T	I	D	P	Q	R	D	E	I	L	L	A	R	N	D	R	F	W	S	V	P	A	K	P	D	L	V	L	F	R	R	G	G	A	P	A	A	L	A	D	S	I	R	N	G	D	T	Q	V	A	Q	V	H	G	G	A	A	T	F	A	Q	L	S	A	I
Template Known Secondary structure		T	S	S				S			S	S								T	T	T	T								T	T		S	S	S			S		S									S											T	S																		T	S
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
								334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																																	.
Query SS confidence		.	.	.	.	.	.																																																	.
Query Sequence		.	.	.	.	.	.	V	S	S	G	I	S	L	G	F	C	Y	L	T	L	R	K	S	P	R	L	S	L	W	Q	A	R	K	V	I	S	I	I	H	Q	S	G	L	L	Q	T	L	E	V	G	E	N	L	I	.	T	A	S	H	A	L	L	P	G	W	T	I	P	H	W	Q	V	P	D	E	V	K	L	P	K
Query Conservation		.	.	.	.	.	.																																																	.
Alig confidence		.	.	.	.	.	.																																																	.
Template Conservation
Template Sequence		P	D	V	R	T	A	R	I	V	T	P	R	V	M	Q	L	T	L	R	A	Q	Q	P	K	L	A	D	P	Q	V	R	K	A	I	L	G	L	I	D	V	D	L	L	A	S	V	G	A	G	D	D	N	T	V	T	L	A	Q	A	Q	V	R	S	P	S	D	P	G	Y	V	P	T	A	P	P	A	M	T	R	D
Template Known Secondary structure		T	T																		T	T	S	G	G	G		S											S												S	S	S								S	S	S		T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		407																													.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.		.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.
Query Sequence		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	L	V	Y	H	L	P	I	E	L	H	T	M	A	E	R	L	Q	A	T	L	A	A	E	G	C	E	L	T	I	I	F	H	N	A	K	N	W	D	D	T	T	L	.	Q	A	H	A	D	L
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.
Template Conservation
Template Sequence		D	A	L	E	L	L	R	D	A	G	Y	V	S	E	P	V	R	E	R	I	V	K	D	G	V	P	L	T	I	V	L	G	V	A	S	N	D	P	T	S	V	A	V	A	N	T	A	A	D	Q	L	R	N	V	G	I	D	A	S	V	L	A	L	D	P	V	A	L	Y	G	D	A	L	V	N	N	R	V	D	A
Template Known Secondary structure										T	T													T	T											T	T																		T	T																T	T	T	T	T	T			S
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.		.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		M	M	G	D	R	L	I	G	E	A	P	E	Y	T	L	E	Q	W	L	R	C	.	D	P	L	W	P	H	V	F	D	A	P	A	Y	A	H	L	Q	S	T	L	D	A	V	Q	I	M	P	D	E	E	N	R	F	N	A	L	K	A	V	F	S	Q	L	M	T	D	A	T	L	T	P	L	F	N	Y	H	Y	R
Query Conservation																							.
Alig confidence																							.																													.	.
Template Conservation																																																				.	.
Template Sequence		V	V	G	W	R	Q	A	G	G	D	L	A	T	V	L	A	S	R	Y	G	C	R	A	L	Q	A	P	S	N	I	T	G	I	C	D	R	S	I	Q	P	R	I	D	A	A	L	D	G	T	D	.	.	D	I	A	D	V	I	Q	A	V	E	P	R	L	W	N	M	A	T	V	L	P	I	L	Q	D	T	T	I
Template Known Secondary structure									S	S												S	T	T					S		T	T	S				G	G	G									T	T	S	S	.	.																T
Template Predicted Secondary structure																																																				.	.
Template SS confidence
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.			.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
		537	.	.	540	.	.	.	.	.	.	.	.	.	550	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	A	P	P	G	V	N	G	V	R	L	T	P	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	A	G	P	S	V	Q	N	V	S	L	T	G	A
Template Known Secondary structure						T	T			S			S
Template Predicted Secondary structure
Template SS confidence
		570	.	.	.	.	.	.	.	.	.	580	.	.	.	.