Job Description P46890 Confidence 100.00% Date Thu Jan 5 12:04:38 GMT 2012 Rank 14 Aligned Residues 435 % Identity 13% Template c1ztyA_ PDB info PDB header:sugar binding protein, signaling protein Chain: A: PDB Molecule:chitin oligosaccharide binding protein; PDBTitle: crystal structure of the chitin oligasaccharide binding2 protein Resolution 2.30 Å

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		120	.	.	.	.	.	.				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure									.	.	.																																					.
Query SS confidence									.	.	.																																					.
Query Sequence		T	P	T	L	R	I	P	.	.	.	Y	Y	R	P	L	E	P	L	Q	P	G	F	L	P	G	R	A	E	Q	H	L	A	G	Q	I	F	S	G	L	T	R	F	D	N	N	T	.	Q	R	P	I	G	D	L	A	H	H	W	E	T	S	T	D	G	L	R	W	D	F	Y	L	R	S	T	L	H	W	H	N	G
Query Conservation									.	.	.																																					.
Alig confidence									.	.	.																			.	.																	.
Template Conservation																														.	.
Template Sequence		R	S	E	L	T	I	V	P	D	F	Y	P	T	M	V	R	N	F	N	P	Y	L	A	T	N	L	R	T	.	.	T	T	D	F	I	Y	E	P	L	V	V	F	N	E	M	K	G	N	T	P	V	F	R	L	A	E	S	Y	K	M	A	D	D	L	M	S	V	T	F	D	I	R	K	G	V	K	W	S	D	G
Template Known Secondary structure									S				S	S							T	T		S	S	S		T	T	.	.	S	B	T	T	T	B			S					G	G	G	T	T					S	S								T	T	S	S								T	T		B		T	T	S
Template Predicted Secondary structure																														.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.												260	.	.
Predicted Secondary structure																						.	.																																													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.																																													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	A	V	K	A	S	H	L	H	Q	R	L	L	M	L	L	Q	L	P	A	.	.	L	D	Q	L	F	I	S	V	K	R	I	E	V	T	H	P	Q	C	L	T	F	F	L	H	R	P	D	Y	W	L	A	H	R	L	A	S	Y	C	S	H	L	A	H	P	.	.	.	.	.	.	.	.	.	.	.	Q	F	P
Query Conservation																						.	.																																													.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.																																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	A	F	T	A	D	D	V	V	Y	S	F	G	L	L	K	A	K	P	E	L	D	Q	R	G	I	N	K	W	V	T	S	V	E	K	V	D	E	Y	K	V	R	F	R	L	S	E	A	N	S	N	V	P	Y	E	I	S	L	I	P	I	V	A	E	H	V	W	K	D	V	K	D	P	T	T	F	T	N	E	N
Template Known Secondary structure			B																S	G	G	G		T	T		G	G	G	T									T	T							S	S			T	T							T	S									T	T		S		T	T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure														.															.																																														.	.	.	.	.	.	.
Query SS confidence														.															.																																														.	.	.	.	.	.	.
Query Sequence		L	I	G	T	G	P	F	R	L	T	Q	F	.	T	A	E	L	V	R	L	E	S	H	D	Y	Y	H	.	L	R	H	P	L	L	K	A	V	E	Y	W	I	T	P	P	L	F	E	K	D	L	G	T	S	C	R	H	P	V	Q	I	T	I	G	K	P	E	E	L	Q	R	V	S	Q	.	.	.	.	.	.	.
Query Conservation														.															.																																														.	.	.	.	.	.	.
Alig confidence														.															.																																														.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	V	G	T	G	P	F	T	V	I	D	T	F	T	P	Q	L	Y	I	Q	C	R	N	P	N	Y	W	D	A	A	N	L	E	V	D	C	L	R	V	P	Q	I	A	N	N	D	Q	L	L	G	K	I	V	N	S	E	L	D	W	T	S	S	F	V	P	D	I	D	R	T	Y	A	A	A	N	P	N	H	H	Y
Template Known Secondary structure					S	S	S									S	S								T	T		T	T	G	G	G													S										T	T			S							T	T					T	G	G	G		T	T
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350							.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure																			.	.	.	.	.	.																																																			.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.																																																			.	.	.	.	.	.	.
Query Sequence		V	S	S	G	I	S	L	G	F	C	Y	L	T	L	R	K	S	.	.	.	.	.	.	P	R	L	S	L	W	Q	A	R	K	V	I	S	I	I	H	Q	S	G	L	L	Q	T	L	E	V	G	E	N	L	I	T	A	S	H	A	L	L	P	G	W	T	I	P	H	W	Q	V	P	D	.	.	.	.	.	.	.
Query Conservation																			.	.	.	.	.	.																																																			.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.																																																			.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	Y	P	A	A	G	T	Q	A	F	M	V	N	F	K	N	P	D	P	A	K	K	E	A	L	D	N	V	D	F	R	R	A	F	S	M	A	L	D	R	Q	T	I	I	D	I	A	F	Y	G	S	G	T	V	N	D	F	A	S	G	L	G	Y	A	F	E	A	W	S	D	E	A	T	H	K	K	Y	K	G	F
Template Known Secondary structure															T	T		S	S								T																						T	T	T		S						T	T				G	G	G	G	G	G											G	G
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
																															401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	K	L	P	K	T	L	T	L	V	Y	H	L	P	I	E	L	H	T	M	A	E	R	L	Q	A	T	L	A	A	E	G	C	E	L	T	I	I	F	H	N	A	K	N	W	D	D	T	T	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	T	Y	D	V	E	G	S	K	K	L	L	A	K	A	G	F	K	D	V	N	G	D	G	F	V	E	T	P	S	G	K	S	F	E	L	L	I	Q	S	P	N	G	W	T	D	F	N	N	T	V	Q	L	A	V	E	Q	L	Q	E	V	G	I	K	A	K	A	R	T	P	E	F	A	V	Y	N	Q	A	M	L
Template Known Secondary structure		G	S														T					S	S	S	S	S				T	T	S											T	T																	T	T	T
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.						.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.
Query SS confidence																																				.	.	.	.	.
Query Sequence		Q	A	H	A	D	L	M	M	G	D	R	L	I	G	E	A	P	E	Y	T	L	E	Q	W	L	R	C	D	P	L	W	P	H	V	.	.	.	.	.	F	D	A	P	A	Y	A	H	L	Q	S	T	L	D	A	V	Q	I	M	P	D	E	E	N	R	F	N	A	L	K	A	V	F	S	Q	L	M	T	D	A	T
Query Conservation																																				.	.	.	.	.
Alig confidence																																				.	.	.	.	.
Template Conservation
Template Sequence		E	G	T	Y	D	V	A	Y	T	N	Y	F	H	G	A	D	P	F	T	Y	W	N	S	G	Y	N	S	A	L	Q	S	G	D	G	M	P	R	F	A	M	H	Y	F	T	D	K	K	L	D	G	L	L	D	S	F	Y	K	T	A	D	K	N	E	Q	L	A	I	A	H	G	I	Q	K	I	I	A	E	N	Q	V
Template Known Secondary structure		T	T			S										S	S	T										G	G	G	G	S	S	T	T			S	T	T	T	T												T	T	T	T	S																						T
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
		527	.	.	530	.	.	.	.	.	.	.	.	.		540	.	.	.	.	.			.	.	.	.	550	.	.	.	.	.	.
Predicted Secondary structure															.							.	.
Query SS confidence															.							.	.
Query Sequence		L	T	P	L	F	N	Y	H	Y	R	I	S	A	.	P	P	G	V	N	G	.	.	V	R	L	T	P	R	G	W	F	E	F
Query Conservation															.							.	.
Alig confidence															.							.	.
Template Conservation
Template Sequence		T	I	P	V	M	S	G	A	W	M	Y	Q	Y	N	T	T	R	F	T	G	W	W	S	E	E	N	P	K	G	R	P	S	V
Template Known Secondary structure		S														T	T	T						B	T	T	B			S
Template Predicted Secondary structure
Template SS confidence
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.