Job Description P33231 Confidence 13.64% Date Thu Jan 5 11:51:31 GMT 2012 Rank 6 Aligned Residues 309 % Identity 13% Template d1xmea1 SCOP info Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Resolution 2.30

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.									.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.																							.	.	.	.	.	.	.	.
Query SS confidence																					.																							.	.	.	.	.	.	.	.
Query Sequence		S	L	I	A	S	L	P	I	L	F	F	F	F	A	L	I	K	L	K	.	L	K	G	Y	V	A	A	S	W	T	V	A	I	A	L	A	V	A	L	L	F	Y	.	.	.	.	.	.	.	.	K	M	P	V	A	N	A	L	A	S	V	V	Y	G	F	F	Y	G	L	W	P	I	A	W	I	I	I	A	A	V
Query Conservation																					.																							.	.	.	.	.	.	.	.
Alig confidence																					.																							.	.	.	.	.	.	.	.																				.
Template Conservation																																																																							.
Template Sequence		W	L	L	P	A	Y	A	I	I	Y	T	I	L	P	K	Q	A	G	G	K	L	V	S	D	P	M	A	R	L	A	F	L	L	F	L	L	L	S	T	P	V	G	F	H	H	Q	F	A	D	P	G	I	D	P	T	W	K	M	I	H	S	V	L	T	L	F	V	A	V	.	P	S	L	M	T	A	F	T	V	A
Template Known Secondary structure													T						T	S		B	S																S	S	T	T	G	G	G	G		T	T		S	S	S																		.
Template Predicted Secondary structure																																																																							.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	Y	K	I	S	V	K	T	G	Q	F	D	I	I	R	S	S	I	L	S	I	T	P	D	Q	R	L	Q	M	L	I	V	G	F	C	F	G	A	F	L	E	G	A	A	G	F	G	A	P	V	A	I	T	A	A	L	L	V	G	L	G	F	K	P	L	Y	A	A	G	L	C	L	I	V	N	T	A	P	V
Query Conservation
Alig confidence																																																.	.	.	.
Template Conservation																																																.	.	.	.
Template Sequence		A	S	L	E	F	A	G	R	L	R	G	G	R	G	L	F	G	W	I	R	A	L	P	W	D	N	P	A	F	V	A	P	V	L	G	L	L	G	F	I	P	G	G	A	G	G	.	.	.	.	I	V	N	A	S	F	T	L	D	Y	V	V	H	N	T	A	W	V	P	G	H	F	H	L	Q	V	A	S	L	V
Template Known Secondary structure											T	T			S	T	T						S		T	T																						.	.	.	.				T	S	G	G	G					T	T	B	T										T	T	T
Template Predicted Secondary structure																																																.	.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.					.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200				.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																		.	.	.
Query SS confidence																																		.	.	.
Query Sequence		A	F	G	A	M	G	I	P	I	L	V	A	G	Q	V	T	G	I	D	S	F	E	I	G	Q	M	V	G	R	Q	L	P	.	.	.	F	M	T	I	I	V	L	F	W	I	M	A	I	M	D	G	W	R	G	I	K	E	T	W	P	A	V	V	V	A	G	G	S	F	A	I	A	Q	Y	L	S	S	N	F	I
Query Conservation																																		.	.	.
Alig confidence																																		.	.	.																																													.
Template Conservation																																																																																	.
Template Sequence		T	L	T	A	M	G	S	L	Y	W	L	L	P	N	L	T	G	K	P	I	S	D	A	Q	R	R	L	G	L	A	V	V	W	L	W	F	L	G	M	M	I	M	A	V	G	L	H	W	A	G	L	L	N	V	P	R	R	A	Y	I	A	Q	V	P	D	A	Y	P	H	A	A	V	P	M	V	F	N	V	L	.
Template Known Secondary structure								T																																													T	T		B	S	S			G	G	G	S	G	G	G		G	G	G										.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.
Predicted Secondary structure																									.																																																		.
Query SS confidence																									.																																																		.
Query Sequence		G	P	E	L	P	D	I	I	S	S	L	V	S	L	L	C	L	T	L	F	L	K	R	.	W	Q	P	V	R	V	F	R	F	G	D	L	G	A	S	Q	V	D	M	T	L	A	H	T	G	Y	T	A	G	Q	V	L	R	A	W	T	P	F	L	F	L	T	A	T	V	T	L	W	S	.	I	P	P	F	K	A
Query Conservation																									.																																																		.
Alig confidence		.	.	.	.																				.																																																		.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	A	G	I	V	L	L	V	A	L	L	L	F	I	Y	G	L	F	S	V	L	L	S	R	E	R	K	P	E	L	A	E	A	P	L	P	F	A	E	V	I	S	G	P	E	D	R	R	L	V	L	A	M	D	R	I	G	F	W	F	A	V	A	A	I	L	V	V	L	A	Y	G	P	T	L	V	Q
Template Known Secondary structure		.	.	.	.																					T										S	S							B				S	S									T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	A	S	G	G	A	L	Y	E	W	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	G	H	L	N	P	V	P	G	W	R	L
Template Known Secondary structure					S							B
Template Predicted Secondary structure
Template SS confidence
		549	550	.	.	.	.	.	.	.	.	.	560	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions