Job Description P33231 Confidence 14.47% Date Thu Jan 5 11:51:31 GMT 2012 Rank 5 Aligned Residues 313 % Identity 13% Template c3eh4A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c oxidase subunit 1; PDBTitle: structure of the reduced form of cytochrome ba3 oxidase from thermus2 thermophilus Resolution 2.90 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.									.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.
Query Sequence		I	W	L	S	S	L	I	A	S	L	P	I	L	F	F	F	F	A	L	I	K	L	K	L	K	G	Y	V	A	A	S	W	T	V	A	I	A	L	A	V	A	L	L	F	Y	.	.	.	.	.	.	.	.	K	M	P	V	A	N	A	L	A	S	V	V	Y	G	F	F	Y	G	L	W	P	I	A	W	I	I	I
Query Conservation																																															.	.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.	.																				.
Template Conservation																																																																										.
Template Sequence		V	Y	F	W	L	L	P	A	Y	A	I	I	Y	T	I	L	P	K	Q	A	G	G	R	L	V	S	D	P	M	A	R	L	A	F	L	L	F	L	L	L	S	T	P	V	G	F	H	H	Q	F	A	D	P	G	I	D	P	T	W	K	M	I	H	S	V	L	T	L	F	V	A	V	.	P	S	L	M	T	A	F
Template Known Secondary structure																T						T	S			S		T	T													S	S	T	T	G	G	G	G		T	T		S	S	S																T		.
Template Predicted Secondary structure																																																																										.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	V	F	V	Y	K	I	S	V	K	T	G	Q	F	D	I	I	R	S	S	I	L	S	I	T	P	D	Q	R	L	Q	M	L	I	V	G	F	C	F	G	A	F	L	E	G	A	A	G	F	G	A	P	V	A	I	T	A	A	L	L	V	G	L	G	F	K	P	L	Y	A	A	G	L	C	L	I	V	N	T
Query Conservation
Alig confidence																																																			.	.	.	.
Template Conservation																																																			.	.	.	.
Template Sequence		T	V	A	A	S	L	E	F	A	G	R	L	R	G	G	R	G	L	F	G	W	I	R	A	L	P	W	D	N	P	A	F	V	A	P	V	L	G	L	L	G	F	I	P	G	G	A	G	G	.	.	.	.	I	V	N	A	S	F	T	L	D	Y	V	V	H	N	T	A	W	V	P	G	H	F	H	L	Q	V	A
Template Known Secondary structure														T	T			S	S	S						S		T	T																						.	.	.	.					S	G	G	G					T	T	B	T										T	T
Template Predicted Secondary structure																																																			.	.	.	.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.					.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200				.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																					.	.	.
Query SS confidence																																					.	.	.
Query Sequence		A	P	V	A	F	G	A	M	G	I	P	I	L	V	A	G	Q	V	T	G	I	D	S	F	E	I	G	Q	M	V	G	R	Q	L	P	.	.	.	F	M	T	I	I	V	L	F	W	I	M	A	I	M	D	G	W	R	G	I	K	E	T	W	P	A	V	V	V	A	G	G	S	F	A	I	A	Q	Y	L	S	S
Query Conservation																																					.	.	.
Alig confidence																																					.	.	.
Template Conservation
Template Sequence		S	L	V	T	L	T	A	M	G	S	L	Y	W	L	L	P	N	L	T	G	K	P	I	S	D	A	Q	R	R	L	G	L	A	V	V	W	L	W	F	L	G	M	M	I	M	A	V	G	L	H	W	A	G	L	L	N	V	P	R	R	A	Y	I	A	Q	V	P	D	A	Y	P	H	A	A	V	P	M	V	F	N
Template Known Secondary structure		T									T	T	S	S	T	T	G	G	G	S	S																																			T	T		B	S	S			G	G	G	S	T	T	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320
Predicted Secondary structure																												.																																																		.
Query SS confidence																												.																																																		.
Query Sequence		N	F	I	G	P	E	L	P	D	I	I	S	S	L	V	S	L	L	C	L	T	L	F	L	K	R	.	W	Q	P	V	R	V	F	R	F	G	D	L	G	A	S	Q	V	D	M	T	L	A	H	T	G	Y	T	A	G	Q	V	L	R	A	W	T	P	F	L	F	L	T	A	T	V	T	L	W	S	.	I	P	P
Query Conservation																												.																																																		.
Alig confidence				.	.	.	.	.																				.																																																		.
Template Conservation				.	.	.	.	.
Template Sequence		V	L	.	.	.	.	.	A	G	I	V	L	L	V	A	L	L	L	F	I	Y	G	L	F	S	V	L	L	S	R	E	R	K	P	E	L	A	E	A	P	L	P	F	A	E	V	I	S	G	P	E	D	R	R	L	V	L	A	M	D	R	I	G	F	W	F	A	V	A	A	I	L	V	V	L	A	Y	G	P	T
Template Known Secondary structure				.	.	.	.	.																					T		S				S	S	T	T	T	S											T	T									T
Template Predicted Secondary structure				.	.	.	.	.
Template SS confidence
		471	.						.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	A	L	F	A	S	G	G	A	L	Y	E	W	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	Q	L	F	G	H	L	N	P	V	P	G	W	R	L
Template Known Secondary structure			T	T	T	T	T	S							B
Template Predicted Secondary structure
Template SS confidence
		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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