Job Description P0A6R3 Confidence 22.03% Date Thu Jan 5 11:03:44 GMT 2012 Rank 446 Aligned Residues 64 % Identity 16% Template c1or7A_ PDB info PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma-e factor; PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea Resolution 2.00 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	Q	D	Q	V	T	Q	K	P	L	R	D	S	V	K	Q	A	L	K	N	Y	F	A	Q	L	N	G	Q	D	V	N	D	L	Y	E	L	V	L	A	E	V	E	Q	P	L	L	D	M	V	M	Q	Y	T	R	G	N	Q	T	R	A	A	L	M	M	G	I	N	R	G	T	L	R	K	K	L	K	K
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Sequence		N	F	E	S	G	G	A	N	L	M	L	S	E	E	L	R	Q	I	V	F	R	T	I	E	S	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	L	R	M	A	I	T	L	R	E	.	L	D	G	L	S	Y	E	E	I	A	A	I	M	D	C	P	V	G	T	V	R	S	R	I	F	R
Template Known Secondary structure		S			S	S																					S		.	.	.	.	.	.	.	.	.	.	.	.	.												.	T	T											T	T	S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.														.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions