Job Description P12282 Confidence 95.79% Date Thu Jan 5 11:33:08 GMT 2012 Rank 240 Aligned Residues 146 % Identity 12% Template c1o0sB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:nad-dependent malic enzyme; PDBTitle: crystal structure of ascaris suum malic enzyme complexed with nadh Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.																			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.											.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	E	M	L	R	Y	N	R	Q	I	I	L	R	G	F	D	F	D	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	L	K	D	S	R	V	L	I	V	G	L	G	G	L	G	C	A	A	S	Q	Y	L	A	S	A	G	V	G	N	.	.	.	.	.	.	.	.	.	.	L
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.
Template Sequence		R	L	L	D	K	Y	Q	D	K	Y	T	M	.	.	F	N	D	D	I	Q	G	T	A	S	V	I	V	A	G	L	L	T	C	T	R	V	T	K	K	L	V	S	Q	E	K	Y	L	F	F	G	A	G	A	A	S	T	G	I	A	E	M	I	V	H	Q	M	Q	N	E	G	I	S	K	E	E	A	C	N	R	I
Template Known Secondary structure								T	T	T	S	S		.	.																								T			G	G	G									S																T	T	T									T
Template Predicted Secondary structure														.	.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.			.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		59	60	.	.	.	.				.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.
Predicted Secondary structure								.	.	.																																										.	.																			.	.
Query SS confidence								.	.	.																																										.	.																			.	.
Query Sequence		T	L	L	D	F	D	.	.	.	T	V	S	L	S	N	L	Q	R	Q	T	L	H	S	D	A	T	V	G	Q	P	K	V	E	S	A	R	D	A	L	T	R	I	N	P	H	I	A	I	T	P	.	.	V	N	A	L	L	D	D	A	E	L	A	A	L	I	A	E	H	D	.	.	L	V	L	D	C	T	D	N
Query Conservation								.	.	.																																										.	.																			.	.
Alig confidence								.	.	.																							.	.																		.	.																			.	.				.
Template Conservation																																	.	.																																											.
Template Sequence		Y	L	M	D	I	D	G	L	V	T	K	N	R	K	E	M	N	P	R	H	V	Q	F	A	K	D	M	P	E	T	T	.	.	S	I	L	E	V	I	R	A	A	R	P	G	A	L	I	G	A	S	T	V	R	G	A	F	N	E	E	V	I	R	A	M	A	E	I	N	E	R	P	I	I	F	.	A	L	S	N
Template Known Secondary structure						T	T				B	S	S		S	S			T	T	T	T	T	T		B	S	S					.	.												S						S	S		T	T		S													S	S					.				S
Template Predicted Secondary structure																																	.	.																																											.
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.			.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430		.	.	.	.
		132			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		V	.	.	A	V	R	N	Q	L	N	A	G	C	F	A	A	K	V	P	L	V	S	G	A	A	I	R	M
Query Conservation			.	.
Alig confidence			.	.
Template Conservation
Template Sequence		P	T	S	K	A	E	C	T	A	E	E	A	Y	T	F	T	N	G	A	A	L	Y	A	S	G	S	P	F
Template Known Secondary structure		S	G	G	G		S	S								T	T	T	S							S	S
Template Predicted Secondary structure
Template SS confidence
		435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions