Job Description P12282 Confidence 95.29% Date Thu Jan 5 11:33:08 GMT 2012 Rank 287 Aligned Residues 148 % Identity 13% Template c1gz3B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:nad-dependent malic enzyme; PDBTitle: molecular mechanism for the regulation of human mitochondrial2 nad(p)+-dependent malic enzyme by atp and fumarate Resolution 2.3 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.																			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.											.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	E	M	L	R	Y	N	R	Q	I	I	L	R	G	F	D	F	D	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	L	K	D	S	R	V	L	I	V	G	L	G	G	L	G	C	A	A	S	Q	Y	L	A	S	A	G	V	G	.	.	.	.	.	.	.	.	.	.	N	L
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.
Template Sequence		R	F	L	R	K	Y	R	E	K	Y	C	T	.	.	F	N	D	D	I	Q	G	T	A	A	V	A	L	A	G	L	L	A	A	Q	K	V	I	S	K	P	I	S	E	H	K	I	L	F	L	G	A	G	E	A	A	L	G	I	A	N	L	I	V	M	S	M	V	E	N	G	L	S	E	Q	E	A	Q	K	K	I
Template Known Secondary structure								T	T	T	S	S		.	.			T	T	T	T																					T	T	T									S																	T	T									T
Template Predicted Secondary structure														.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.			.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		59	60	.	.	.	.		.	.	.	.	.			70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130
Predicted Secondary structure								.						.	.		.																																					.	.																	.	.
Query SS confidence								.						.	.		.																																					.	.																	.	.
Query Sequence		T	L	L	D	F	D	.	T	V	S	L	S	.	.	N	.	L	Q	R	Q	T	L	H	S	D	A	T	V	G	Q	P	K	V	E	S	A	R	D	A	L	T	R	I	N	P	H	I	A	I	T	P	V	.	.	N	A	L	L	D	D	A	E	L	A	A	L	I	A	E	H	.	.	D	L	V	L	D	C	T	D
Query Conservation								.						.	.		.																																					.	.																	.	.
Alig confidence								.						.	.		.																																					.	.																	.	.					.
Template Conservation																																																																														.
Template Sequence		W	M	F	D	K	Y	G	L	L	V	K	G	R	K	A	K	I	D	S	Y	Q	E	P	F	T	H	S	A	P	E	S	I	P	D	T	F	E	D	A	V	N	I	L	K	P	S	T	I	I	G	V	A	G	A	G	R	L	F	T	P	D	V	I	R	A	M	A	S	I	N	E	R	P	V	I	F	.	A	L	S
Template Known Secondary structure						T	T				B	T	T		S	S				T	T	T	G	G	G		B				S	S			S	S											S							S	S	S			S													S	S					.
Template Predicted Secondary structure																																																																														.
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.		.	.	420
		131	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		N	V	A	.	.	V	R	N	Q	L	N	A	G	C	F	A	A	K	V	P	L	V	S	G	A	A	I	R	M
Query Conservation					.	.
Alig confidence					.	.
Template Conservation
Template Sequence		N	P	T	A	Q	A	E	C	T	A	E	E	A	Y	T	L	T	E	G	R	C	L	F	A	S	G	S	P	F
Template Known Secondary structure		S	S	G	G	G	S	S	S									T	T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions