Job Description P0CF88 Confidence 99.91% Date Thu Jan 5 11:31:46 GMT 2012 Rank 4 Aligned Residues 136 % Identity 15% Template d1hyva_ SCOP info Ribonuclease H-like motif Ribonuclease H-like Retroviral integrase, catalytic domain Resolution 1.70

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		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	H	W	E	G	D	L	V	S	G	T	K	N	S	H	I	A	T	L	V	D	R	K	S	R	Y	T	I	I	V	R	L	R	G	K	D	S	V	S	V	N	Q	A	L	T	D	K	F	L	S	L	P	S	E	L	R	K	S	L	T	W	D	R	G	M	E	L	A	R	H	L	E	F	T	V	S	T	G	V
Query Conservation
Alig confidence														.	.																																								.	.	.																				.	.	.	.	.
Template Conservation														.	.																																								.	.	.																				.	.	.	.	.
Template Sequence		P	G	I	W	Q	L	D	T	H	L	E	G	.	.	K	V	I	L	V	A	V	H	V	A	S	G	Y	I	E	A	E	V	I	P	A	E	T	G	Q	E	T	A	Y	F	L	L	K	L	A	G	R	W	P	.	.	.	V	K	T	V	H	T	D	N	G	S	N	F	T	S	T	T	V	K	A	.	.	.	.	.
Template Known Secondary structure		T	T									T	T	.	.									T	T	T									S	S																	S		.	.	.							S		G	G	G	G		S						.	.	.	.	.
Template Predicted Secondary structure														.	.																																								.	.	.																				.	.	.	.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.				.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	Y	F	C	D	P	Q	S	P	W	Q	R	G	T	N	E	N	T	N	G	L	I	R	Q	Y	F	P	K	K	T	C	L	A	Q	Y	T	Q	H	E	L	D	L	V	A	A	Q	L	N	N	R	P	R	K	T	L	K	F	K	T	P	K	E	I	I	E	R	G	V	A
Query Conservation
Alig confidence		.																																																					.	.	.
Template Conservation		.																																																					.	.	.
Template Sequence		.	A	W	W	A	G	I	K	Q	E	F	G	Q	G	V	I	E	S	M	N	K	E	L	K	K	I	I	G	Q	V	R	D	Q	A	E	H	L	K	T	A	V	Q	M	A	V	F	I	H	N	K	K	R	K	.	.	.	G	G	Y	S	A	G	E	R	I	V	D	I	I	A
Template Known Secondary structure		.			T	T																										G	G	G	S	S	S																		.	.	.
Template Predicted Secondary structure		.																																																					.	.	.
Template SS confidence
			129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180				.	.	.	.	.	.	.	.	.	190	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions