Job Description P0CF88 Confidence 99.67% Date Thu Jan 5 11:31:46 GMT 2012 Rank 15 Aligned Residues 124 % Identity 19% Template d1cxqa_ SCOP info Ribonuclease H-like motif Ribonuclease H-like Retroviral integrase, catalytic domain Resolution 1.02

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		231	.	.	.	.	.	.	.	.	240	.				.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300			.	.	.	.	.
Predicted Secondary structure													.	.	.																																																												.	.
Query SS confidence													.	.	.																																																												.	.
Query Sequence		L	G	H	W	E	G	D	L	V	S	G	.	.	.	T	K	N	S	H	I	A	T	L	V	D	R	K	S	R	Y	T	I	I	V	R	L	R	G	K	D	S	V	S	V	N	Q	A	L	T	D	K	F	L	S	L	P	S	E	L	R	K	S	L	T	W	D	R	G	M	E	L	A	R	.	.	H	L	E	F	T
Query Conservation													.	.	.																																																												.	.
Alig confidence													.	.	.																																										.	.																	.	.
Template Conservation																																																									.	.
Template Sequence		L	Q	I	W	Q	T	D	F	T	L	E	P	R	M	A	P	R	S	W	L	A	V	T	V	D	T	A	S	S	A	I	V	V	T	Q	H	G	R	V	T	S	V	A	A	Q	H	H	W	A	T	A	I	A	V	L	.	.	G	R	P	K	A	I	K	T	D	N	G	S	C	F	T	S	K	S	T	R	E	W	L
Template Known Secondary structure													G	G	G	T	T	S									T	T	T									S	S																		.	.				S						S						S
Template Predicted Secondary structure																																																									.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.									340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure																																				.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.
Query Sequence		V	S	T	G	V	K	V	Y	F	C	D	P	Q	S	P	W	Q	R	G	T	N	E	N	T	N	G	L	I	R	Q	Y	F	P	K	.	.	.	.	.	.	.	.	K	T	C	L	A	Q	Y	T	Q	H	E	L	D	L	V	A	A	Q	L	N	N
Query Conservation																																				.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.																								.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.
Template Sequence		A	R	W	G	I	A	H	.	.	.	.	T	T	G	I	P	G	Q	A	M	V	E	R	A	N	R	L	L	K	D	K	I	R	V	L	A	E	G	D	G	F	M	K	R	I	P	T	S	K	Q	G	E	L	L	A	K	A	M	Y	A	L	N	H
Template Known Secondary structure					T				.	.	.	.																												T	T		S	S	S
Template Predicted Secondary structure									.	.	.	.
Template SS confidence
		136	.	.	.	140	.	.					.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions