Job Description P0CF88 Confidence 99.91% Date Thu Jan 5 11:31:46 GMT 2012 Rank 3 Aligned Residues 138 % Identity 17% Template d1c6va_ SCOP info Ribonuclease H-like motif Ribonuclease H-like Retroviral integrase, catalytic domain Resolution 3.00

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		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300			.	.	.	.	.	.
Predicted Secondary structure																																																																										.	.
Query SS confidence																																																																										.	.
Query Sequence		R	S	L	G	H	W	E	G	D	L	V	S	G	T	K	N	S	H	I	A	T	L	V	D	R	K	S	R	Y	T	I	I	V	R	L	R	G	K	D	S	V	S	V	N	Q	A	L	T	D	K	F	L	S	L	P	S	E	L	R	K	S	L	T	W	D	R	G	M	E	L	A	R	.	.	H	L	E	F	T	V
Query Conservation																																																																										.	.
Alig confidence																		.																																							.	.	.															.	.
Template Conservation																		.																																							.	.	.
Template Sequence		S	D	L	G	T	W	Q	M	D	C	T	H	L	E	G	K	.	I	V	I	V	A	V	H	V	A	S	G	F	I	E	A	E	V	I	P	Q	E	T	G	R	Q	T	A	L	F	L	L	K	L	A	G	R	W	P	.	.	.	I	T	H	L	H	T	D	N	G	A	N	F	A	S	Q	E	V	K	M	V	A	W
Template Known Secondary structure				T	T										T	T		.								T	T	S									S	S		S													T	T	S		.	.	.										S	S	T	T	S	S
Template Predicted Secondary structure																		.																																							.	.	.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.				110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	G	V	K	V	Y	F	C	D	P	Q	S	P	W	Q	R	G	T	N	E	N	T	N	G	L	I	R	Q	Y	F	P	K	K	T	C	L	A	Q	Y	T	Q	H	E	L	D	L	V	A	A	Q	L	N	N	R	P	R	K	T	L	K	F	K	T	P	K	E	I	I	E	R	G	V	A	L
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	A	G	I	E	H	T	F	G	.	.	.	.	.	.	.	.	.	.	.	E	A	M	N	H	H	L	K	N	Q	I	D	R	I	R	E	Q	A	N	S	V	E	T	I	V	L	M	A	V	H	C	M	N	H	K	R	R	G	G	I	G	D	M	T	P	A	E	R	L	I	N	M	I	T	T
Template Known Secondary structure				T							.	.	.	.	.	.	.	.	.	.	.			T	T	T								T	T	T	T	S	S	S															S				S	S	S	S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140												.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions