Job Description P0CF88 Confidence 98.52% Date Thu Jan 5 11:31:46 GMT 2012 Rank 21 Aligned Residues 95 % Identity 23% Template c6paxA_ PDB info PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.				.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.
Predicted Secondary structure																																									.	.	.												.																						.	.
Query SS confidence																																									.	.	.												.																						.	.
Query Sequence		R	T	F	T	A	E	E	K	A	S	V	F	E	L	W	K	N	G	T	G	F	S	E	I	A	N	I	L	G	S	K	P	G	T	I	F	T	M	L	.	.	.	R	D	T	G	G	I	K	P	H	E	R	.	K	R	A	V	A	H	L	T	L	S	E	R	E	E	I	R	A	G	L	S	A	.	.	K	M	S
Query Conservation																																									.	.	.												.																						.	.
Alig confidence																																									.	.	.												.																						.	.
Template Conservation
Template Sequence		R	P	L	P	D	S	T	R	Q	R	I	V	E	L	A	H	S	G	A	R	P	C	D	I	S	R	I	L	Q	V	S	N	G	C	V	S	K	I	L	G	R	Y	Y	A	T	G	S	I	R	P	R	A	I	G	G	S	K	P	R	V	A	T	P	E	V	V	S	K	I	A	Q	Y	K	Q	E	C	P	S	I	F
Template Known Secondary structure		S																T	T											T																	S			S					S					S	S	S																T	T
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		77	.	.	80	.	.	.	.				.	.								.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.			.	.	.	.	.	.	.
Query SS confidence										.	.	.			.	.	.	.	.	.	.
Query Sequence		I	R	A	I	A	T	A	L	.	.	.	N	R	.	.	.	.	.	.	.	S	P	S	T	I	S	R	E	V	Q	R
Query Conservation										.	.	.			.	.	.	.	.	.	.
Alig confidence										.	.	.			.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	W	E	I	R	D	R	L	L	S	E	G	V	C	T	N	D	N	I	P	S	V	S	S	I	N	R	V	L	R	N
Template Known Secondary structure												T	T	S	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions