Job Description P0CF88 Confidence 86.39% Date Thu Jan 5 11:31:46 GMT 2012 Rank 162 Aligned Residues 82 % Identity 18% Template c3l1pA_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:pou domain, class 5, transcription factor 1; PDBTitle: pou protein:dna complex Resolution 2.80 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.							.	.	.	.	.	.																					.	.	40	.	.	.	.									.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure																			.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.
Query Sequence		E	L	W	K	N	G	T	G	F	S	E	I	A	N	I	L	G	.	.	.	.	.	.	S	K	P	G	T	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	T	M	L	R	D	T	.	.	.	.	.	.	.	.	G	G	I	K	P	H	E	R	K	R	A	V	A	H	L	T
Query Conservation																			.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	R	I	T	L	G	Y	T	Q	A	D	V	G	L	T	L	G	V	L	F	G	K	V	F	S	Q	T	T	I	S	R	F	E	A	L	Q	L	S	L	K	N	M	S	K	L	R	P	L	L	E	K	W	V	E	E	A	D	N	N	E	N	L	Q	E	I	S	K	S	V	Q	A	R	K	R	K	R	T	S	I	E
Template Known Secondary structure						T	T															S													T	T		S																				T	T							S	S						S
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.						.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.
Query SS confidence																		.	.	.	.	.
Query Sequence		L	S	E	R	E	E	I	R	A	G	L	S	A	K	M	S	.	.	.	.	.	I	R	A	I	A	T	A	L	N	R	S	P	S	T	I	S	R	E	V	Q
Query Conservation																		.	.	.	.	.
Alig confidence																		.	.	.	.	.
Template Conservation
Template Sequence		N	R	V	R	W	S	L	E	T	M	F	L	K	S	P	K	P	S	L	Q	Q	I	T	H	I	A	N	Q	L	G	L	E	K	D	V	V	R	V	W	F	S
Template Known Secondary structure										T	T	T	T	T		S														T	T
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions