Job Description P0CF88 Confidence 99.83% Date Thu Jan 5 11:31:46 GMT 2012 Rank 8 Aligned Residues 142 % Identity 17% Template c3kksB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of catalytic core domain of biv integrase in crystal2 form ii Resolution 2.20 Å

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		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300			.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.
Query SS confidence																																																																							.	.
Query Sequence		G	H	W	E	G	D	L	V	S	G	T	K	N	S	H	I	A	T	L	V	D	R	K	S	R	Y	T	I	I	V	R	L	R	G	K	D	S	V	S	V	N	Q	A	L	T	D	K	F	L	S	L	P	S	E	L	R	K	S	L	T	W	D	R	G	M	E	L	A	R	.	.	H	L	E	F	T	V	S	T	G
Query Conservation																																																																							.	.
Alig confidence														.																																							.	.					.												.	.
Template Conservation														.																																							.	.					.
Template Sequence		H	L	W	Q	M	D	N	T	H	W	N	K	.	T	I	I	W	V	A	V	E	T	N	S	G	L	V	E	A	Q	V	I	P	E	E	T	A	L	Q	V	A	L	C	I	L	Q	L	I	Q	R	Y	.	.	T	V	L	H	.	L	H	S	D	N	G	P	C	F	T	A	H	R	I	E	N	L	C	K	Y	L	G
Template Known Secondary structure												T	T	.									T	T	T	T								S	S	S																S	.	.			S		.					S						S										T	T
Template Predicted Secondary structure														.																																							.	.					.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	V	Y	F	C	D	P	Q	S	P	W	Q	R	G	T	N	E	N	T	N	G	L	I	R	Q	Y	F	P	K	K	T	C	L	A	Q	Y	T	Q	H	E	L	D	L	V	A	A	Q	L	N	N	R	P	R	K	T	L	K	F	K	T	P	K	E	I	I	E	R	G
Query Conservation
Alig confidence																																																												.
Template Conservation																																																												.
Template Sequence		I	T	K	T	T	G	I	P	Y	N	P	Q	S	Q	G	V	V	E	R	A	H	R	D	L	K	D	R	L	A	A	Y	Q	G	D	C	E	T	V	E	A	A	L	S	L	A	L	V	S	L	N	K	K	R	G	G	I	G	G	.	H	T	P	Y	E	I	Y	L	E	S
Template Known Secondary structure							S	S		S																							G	G	G		S	S															S				G	G	G	.
Template Predicted Secondary structure																																																												.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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