Job Description P0CF88 Confidence 99.82% Date Thu Jan 5 11:31:46 GMT 2012 Rank 10 Aligned Residues 140 % Identity 18% Template c3hpgC_ PDB info PDB header:transferase Chain: C: PDB Molecule:integrase; PDBTitle: visna virus integrase (residues 1-219) in complex with ledgf2 ibd: examples of open integrase dimer-dimer interfaces Resolution 3.28 Å

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		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300			.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.	.
Query SS confidence																																																																								.	.
Query Sequence		L	G	H	W	E	G	D	L	V	S	G	T	K	N	S	H	I	A	T	L	V	D	R	K	S	R	Y	T	I	I	V	R	L	R	G	K	D	S	V	S	V	N	Q	A	L	T	D	K	F	L	S	L	P	S	E	L	R	K	S	L	T	W	D	R	G	M	E	L	A	R	.	.	H	L	E	F	T	V	S	T
Query Conservation																																																																								.	.
Alig confidence													.																																									.	.		.															.	.
Template Conservation													.																																									.	.		.
Template Sequence		I	D	H	W	Q	V	D	Y	T	H	Y	.	E	D	K	I	I	L	V	W	V	E	T	N	S	G	L	I	Y	A	E	R	V	K	G	E	T	G	Q	E	F	R	V	Q	T	M	K	W	Y	A	M	F	.	.	A	.	P	K	S	L	Q	S	D	N	G	P	A	F	V	A	E	S	T	Q	L	L	M	K	Y	L
Template Known Secondary structure													.	S	S									T	T	T									S																		S	.	.		.		S						S
Template Predicted Secondary structure													.																																									.	.		.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110			.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	K	V	Y	F	C	D	P	Q	S	P	W	Q	R	G	T	N	E	N	T	N	G	L	I	R	Q	Y	F	P	K	K	T	C	L	A	Q	Y	T	Q	H	E	L	D	L	V	A	A	Q	L	N	N	R	P	R	K	T	L	K	F	K	T	P	K	E	I	I
Query Conservation
Alig confidence																																																													.
Template Conservation																																																													.
Template Sequence		G	I	E	H	T	T	G	I	P	W	N	P	Q	S	Q	A	L	V	E	R	T	H	Q	T	L	K	N	T	L	E	K	L	I	P	M	F	N	A	F	E	S	A	L	A	G	T	L	I	T	L	N	I	K	R	K	G	G	L	G	.	T	S	P	M	D	I	F
Template Known Secondary structure		T						S	S				T	T																				G	G	G		S	S														T	T			B	T	T	T	.	B
Template Predicted Secondary structure																																																													.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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