Job Description P0CF88 Confidence 99.16% Date Thu Jan 5 11:31:46 GMT 2012 Rank 18 Aligned Residues 290 % Identity 11% Template c3hosA_ PDB info PDB header:transferase, dna binding protein/dna Chain: A: PDB Molecule:transposable element mariner, complete cds; PDBTitle: crystal structure of the mariner mos1 paired end complex with mg Resolution 3.50 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30								.	.	.	.	.	.	.	.	.	40	.	.	.					.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.														.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.														.	.	.	.
Query Sequence		A	E	E	K	A	S	V	F	E	L	W	K	N	G	T	G	F	S	E	I	A	N	I	L	.	.	.	.	.	.	.	G	S	K	P	G	T	I	F	T	M	L	R	D	.	.	.	.	T	G	G	I	K	P	H	E	R	K	R	A	V	A	H	L	T	L	S	E	R	E	E	I	R	A	G	L	S	A	K	M
Query Conservation																										.	.	.	.	.	.	.														.	.	.	.
Alig confidence																										.	.	.	.	.	.	.														.	.	.	.																									.
Template Conservation																																																																										.
Template Sequence		E	Q	T	R	T	V	L	I	F	C	F	H	L	K	K	T	A	A	E	S	H	R	M	L	V	E	A	F	G	E	Q	V	P	T	V	K	T	C	E	R	W	F	Q	R	F	K	S	G	D	F	D	V	D	D	K	E	H	G	K	P	P	K	R	Y	E	D	A	E	L	Q	A	L	.	L	D	E	D	D	A	Q
Template Known Secondary structure														T	T														T		S		S															T	T				S	S										S	S									.				S	S
Template Predicted Secondary structure																																																																										.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	R	A	I	A	T	A	L	N	R	S	P	S	T	I	S	R	E	V	Q	R	N	R	G	R	R	Y	Y	K	A	V	D	A	N	N	R	A	N	R	M	A	K	R	P	K	P	C	L	L	D	Q	N	L	P	L	R	K	L	V	L	E	K	L	E	M	K	W	S	P	E	Q	I	S	G	W	L	R	R	T
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	Q	K	Q	L	A	E	Q	L	E	V	S	Q	Q	A	V	S	N	R	L	R	E	M	G	K	I	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	G	R	W	V	P	H	E	L	N	E	R	Q	M	E	R	R	K	N	T	C	E	I	L	L	S	R	Y	K	R	K	S	F	L	H	R	I
Template Known Secondary structure								T	T	T	T	S												T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S																											G	G	G	G
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.																.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	R	Q	K	T	L	R	I	S	P	E	T	I	Y	K	T	L	Y	F	R	S	R	E	A	L	H	H	L	N	I	Q	H	L	R	R	S	H	S	L	R	H	G	R	R	H	T	R	K	G	E	R	G	T	I	N	I	V	N	G	T	P	I	H	E	R	S	R	N	I	D	N	R	R	S	L	G	H	W	E
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	T	G	D	E	K	W	I	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	V	N	P	K	R	K	K	S	Y	V	D	P	G	Q	P	A	T	S	T	A	R	P	N	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	B										S	S	S											S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.																								.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.							.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300			.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.																																	.	.
Query SS confidence																																			.	.	.	.	.	.																																	.	.
Query Sequence		G	D	L	V	S	G	T	K	N	S	H	I	A	T	L	V	D	R	K	S	R	Y	T	I	I	V	R	L	R	G	K	D	S	.	.	.	.	.	.	V	S	V	N	Q	A	L	T	D	K	F	L	S	L	P	S	E	L	R	K	S	L	T	W	D	R	G	M	E	L	A	R	.	.	H	L	E	F	T	V	S
Query Conservation																																			.	.	.	.	.	.																																	.	.
Alig confidence		.	.	.	.	.	.																												.	.	.	.	.	.																																	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	F	G	K	K	T	M	L	C	V	W	W	D	Q	S	G	V	I	Y	Y	E	L	L	K	P	G	E	T	V	N	A	A	R	Y	Q	Q	Q	L	I	N	L	N	R	A	L	Q	R	K	R	P	E	Y	R	V	I	F	L	H	D	N	A	P	S	H	T	A	R	A	V	R	D	T	L	E	T
Template Known Secondary structure		.	.	.	.	.	.	S												T	T										S	S																								S												S	T	T	S										T
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	V	K	V	Y	F	C	D	P	Q	S	P	W	Q	R	G	T	N	E	N	T	N	G	L	I	R	Q	Y	F	P	K	K	T	C	L	A	Q	Y	T	Q	H	E	L	D	L	V	A	A	Q	L	N	N	R	P	R	K	T	L
Query Conservation
Alig confidence																																.									.
Template Conservation																																.									.
Template Sequence		L	N	W	E	V	L	P	H	A	A	Y	S	P	D	L	A	P	S	D	Y	H	L	F	A	S	M	G	H	A	L	.	A	E	Q	R	F	D	S	Y	.	E	S	V	K	K	W	L	D	E	W	F	A	A	K	D	D	E	F	Y
Template Known Secondary structure		T									T	T		T	T	S						T									T	.	T	T		B		S	S		.														S
Template Predicted Secondary structure																																.									.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.		.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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