Job Description P0CF88 Confidence 99.59% Date Thu Jan 5 11:31:46 GMT 2012 Rank 16 Aligned Residues 133 % Identity 17% Template c3dlrA_ PDB info PDB header:transferase Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of the catalytic core domain from pfv2 integrase Resolution 2.20 Å

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		231	.	.	.	.	.	.	.	.	240					.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.
Query SS confidence												.	.	.	.
Query Sequence		L	G	H	W	E	G	D	L	V	S	.	.	.	.	G	T	K	N	S	H	I	A	T	L	V	D	R	K	S	R	Y	T	I	I	V	R	L	R	G	K	D	S	V	S	V	N	Q	A	L	T	D	K	F	L	S	L	P	S	E	L	R	K	S	L	T	W	D	R	G	M	E	L	A	R	H	L	E	F	T	V
Query Conservation												.	.	.	.
Alig confidence												.	.	.	.																																				.							.	.																						.
Template Conservation																																																			.							.	.																						.
Template Sequence		F	D	K	F	F	I	D	Y	I	G	P	L	P	P	S	Q	G	Y	L	Y	V	L	V	V	V	D	G	X	T	G	F	T	W	L	Y	P	T	K	A	P	S	T	S	A	T	V	K	S	L	.	N	V	L	T	S	I	.	.	A	I	P	K	V	I	H	S	D	Q	G	A	A	F	T	S	S	T	F	A	E	.
Template Known Secondary structure		T	S											S		B	T	T	B									T	T	T									S	S	S										.				T	T	T	.	.				S						S						S						.
Template Predicted Secondary structure																																																			.							.	.																						.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		S	T	G	V	K	V	Y	F	C	D	P	Q	S	P	W	Q	R	G	T	N	E	N	T	N	G	L	I	R	Q	Y	F	P	K	K	T	C	L	A	.	Q	Y	T	Q	H	E	L	D	L	V	A	A	Q	L	N	N	R	P	R	K	T	L	K	F	K	T	P	K	E	I	I
Query Conservation																																								.
Alig confidence		.	.	.	.	.	.	.																																.																									.
Template Conservation		.	.	.	.	.	.	.																																																									.
Template Sequence		.	.	.	.	.	.	.	W	A	K	E	R	G	I	H	L	E	F	S	V	E	R	K	N	S	D	I	K	R	L	L	T	K	L	L	V	G	R	P	T	K	W	Y	D	L	L	P	V	V	Q	L	A	L	N	N	T	Y	S	P	V	L	K	Y	.	T	P	H	Q	L	L
Template Known Secondary structure		.	.	.	.	.	.	.						T																							T	T		G	G	G														T	S			S	S		S	S	.
Template Predicted Secondary structure		.	.	.	.	.	.	.																																																									.
Template SS confidence
									198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions