Job Description P0CF88 Confidence 86.59% Date Thu Jan 5 11:31:46 GMT 2012 Rank 158 Aligned Residues 82 % Identity 17% Template c3d1nK_ PDB info PDB header:transcription regulator/dna Chain: K: PDB Molecule:pou domain, class 6, transcription factor 1; PDBTitle: structure of human brn-5 transcription factor in complex2 with corticotrophin-releasing hormone gene promoter Resolution 2.51 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.							.	.	.	.	.	.	.	.																					40	.	.	.	.															.	.	.	.	.	50	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	L	W	K	N	G	T	G	F	S	E	I	A	N	I	L	G	.	.	.	.	.	.	S	K	P	G	T	I	F	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	L	R	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	I	K	P	H	E	R	K	R
Query Conservation																			.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	R	L	S	L	G	L	T	Q	T	Q	V	G	Q	A	X	T	A	T	E	G	P	A	Y	S	Q	S	A	I	S	R	F	E	K	L	D	I	T	P	K	S	A	Q	K	L	K	P	V	L	E	K	W	L	N	E	A	E	L	R	N	Q	E	G	Q	Q	N	L	X	E	F	V	G	G	E	P	S	K	K	R	K
Template Known Secondary structure					T	T	T													S	S	S														T		S																						T	T	S	S	S										S	S
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.						.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.
Query SS confidence																								.	.	.	.	.
Query Sequence		A	V	A	H	L	T	L	S	E	R	E	E	I	R	A	G	L	S	A	K	M	S	.	.	.	.	.	I	R	A	I	A	T	A	L	N	R	S	P	S	T	I	S	R	E	V	Q
Query Conservation																								.	.	.	.	.
Alig confidence																								.	.	.	.	.
Template Conservation
Template Sequence		R	R	T	S	F	T	P	Q	A	I	E	A	L	N	A	Y	F	E	K	N	P	L	P	T	G	Q	E	I	T	E	X	A	K	E	L	N	Y	D	R	E	V	V	R	V	W	F	S
Template Known Secondary structure																						S	S													T	T	S
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions