Job Description P0CF88 Confidence 60.05% Date Thu Jan 5 11:31:46 GMT 2012 Rank 495 Aligned Residues 96 % Identity 10% Template c2h8rA_ PDB info PDB header:transcription activator/dna Chain: A: PDB Molecule:hepatocyte nuclear factor 1-beta; PDBTitle: hepatocyte nuclear factor 1b bound to dna: mody5 gene2 product Resolution 3.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50																								.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	R	R	T	F	T	A	E	E	K	A	S	V	F	E	L	W	K	N	G	T	G	F	S	E	I	A	N	I	L	G	S	K	P	G	T	I	F	T	M	L	R	D	T	G	G	I	K	P	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	K	R	A	V	A
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	S	E	D	P	W	R	A	A	K	M	I	K	G	Y	M	Q	Q	H	N	I	P	Q	R	E	V	V	D	V	T	G	L	N	Q	S	H	L	S	Q	H	L	N	K	G	T	P	M	K	T	Q	K	R	A	A	L	Y	T	W	Y	V	R	K	Q	R	E	I	L	R	Q	F	N	Q	T	V	M	R	R	N	R	F
Template Known Secondary structure		T	T	S																	T											T											T	T																										T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.						.	.	.	80	.	.	.	.	.																						.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	L	T	L	S	E	R	E	E	I	R	A	G	L	S	A	K	M	S	.	.	.	.	.	I	R	A	I	A	T	A	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	P	S	T	I	S	R	E	V	Q
Query Conservation																					.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	W	G	P	A	S	Q	Q	I	L	Y	Q	A	Y	D	R	Q	K	N	P	S	K	E	E	R	E	A	L	V	E	E	C	N	R	A	E	C	L	Q	R	G	V	S	P	S	K	A	H	G	L	G	S	N	L	V	T	E	V	R	V	Y	N	W	F	A
Template Known Secondary structure																			S	S																					T	T			S	T	T	G	G	G	G	T	T	S
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions