Job Description P0CF88 Confidence 65.01% Date Thu Jan 5 11:31:46 GMT 2012 Rank 455 Aligned Residues 90 % Identity 24% Template c1s7eA_ PDB info PDB header:transcription Chain: A: PDB Molecule:hepatocyte nuclear factor 6; PDBTitle: solution structure of hnf-6 Resolution UNK

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Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.
Predicted Secondary structure												.															.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.															.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	A	E	E	K	A	S	V	F	E	.	L	W	K	N	G	T	G	F	S	E	I	A	N	I	.	L	G	S	K	P	G	T	I	F	T	M	L	R	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation												.															.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.															.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	K	E	V	A	Q	R	I	T	T	E	L	K	R	Y	S	I	P	Q	A	I	F	A	Q	R	V	L	C	R	S	Q	G	T	L	S	D	L	L	R	N	P	K	P	W	S	K	L	K	S	G	R	E	T	F	R	R	M	W	K	W	L	Q	E	P	E	F	Q	R	M	S	A	L	R	L	A	A	C	K	R	K
Template Known Secondary structure		S												T	S	S											T	S	S	S		S	S						T	T	S			T	T				S	S														T	T	S			T	T	S	S				S				S
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
						45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.						.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																	.	.	.	.	.
Query SS confidence		.	.	.	.																																	.	.	.	.	.
Query Sequence		.	.	.	.	G	G	I	K	P	H	E	R	K	R	A	V	A	H	L	T	L	S	E	R	E	E	I	R	A	G	L	S	A	K	M	S	.	.	.	.	.	I	R	A	I	A	T	A	L	N	R	S	P	S	T	I	S	R	E	V
Query Conservation		.	.	.	.																																	.	.	.	.	.
Alig confidence		.	.	.	.																																	.	.	.	.	.
Template Conservation
Template Sequence		E	Q	E	H	G	K	D	R	G	N	T	P	K	K	P	R	L	V	F	T	D	V	Q	R	R	T	L	H	A	I	F	K	E	N	K	R	P	S	K	E	L	Q	I	T	I	S	Q	Q	L	G	L	E	L	S	T	V	S	N	F	F
Template Known Secondary structure						S	S	S										S														T	T	S	S		S	S	T									T	T	S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions