Job Description P0CF88 Confidence 90.20% Date Thu Jan 5 11:31:46 GMT 2012 Rank 123 Aligned Residues 98 % Identity 14% Template c1iufA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:centromere abp1 protein; PDBTitle: low resolution solution structure of the two dna-binding2 domains in schizosaccharomyces pombe abp1 protein Resolution UNK

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20				.	.	.	.	.	.	.	.	.	30							.	.	.	.	.	.	.	.	.	40	.	.	.								.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure																					.	.	.											.	.	.	.	.	.														.	.	.	.	.	.	.
Query SS confidence																					.	.	.											.	.	.	.	.	.														.	.	.	.	.	.	.
Query Sequence		R	R	T	F	T	A	E	E	K	A	S	V	F	E	L	W	K	N	G	.	.	.	T	G	F	S	E	I	A	N	I	L	.	.	.	.	.	.	G	S	K	P	G	T	I	F	T	M	L	R	D	.	.	.	.	.	.	.	T	G	G	I	K	P	H	E	R	K	R	A	V	A	H	L	T	L	S	E	R	E
Query Conservation																					.	.	.											.	.	.	.	.	.														.	.	.	.	.	.	.
Alig confidence																					.	.	.											.	.	.	.	.	.														.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	R	A	I	T	E	H	E	K	R	A	L	R	H	Y	F	F	Q	L	Q	N	R	S	G	Q	Q	D	L	I	E	W	F	R	E	K	F	G	K	D	I	S	Q	P	S	V	S	Q	I	L	S	S	K	Y	S	Y	L	D	N	T	V	E	K	P	W	D	V	K	R	N	R	P	P	K	Y	P	L	L	E	A	A
Template Known Secondary structure		S	S				S												S	S	S	S																S	S			S	S	S	S	T	T										T	T	T	S		S	S	S	S	S	S	S						S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		66	.	.	.	70	.	.	.	.	.	.												.	.	.	80	.	.	.	.	.	.										.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Query Sequence		E	I	R	A	G	L	S	A	K	M	S	.	.	.	.	.	.	.	.	.	.	.	I	R	A	I	A	T	A	L	N	R	.	.	.	.	.	.	.	.	.	S	P	S	T	I	S	R	E	V	Q	R	N	R
Query Conservation													.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	F	E	W	Q	V	Q	Q	G	D	D	A	T	L	S	G	E	T	I	K	R	A	A	A	I	L	W	H	K	I	P	E	Y	Q	D	Q	P	V	P	N	F	S	N	G	W	L	E	G	F	R	K	R	H	I
Template Known Secondary structure									T		T	T				S	S															S	S	S	S						S			S										T	S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions