Job Description P0CF88 Confidence 73.22% Date Thu Jan 5 11:31:46 GMT 2012 Rank 324 Aligned Residues 86 % Identity 20% Template c1hf0A_ PDB info PDB header:transcription factor Chain: A: PDB Molecule:octamer-binding transcription factor 1; PDBTitle: crystal structure of the dna-binding domain of oct-1 bound2 to dna as a dimer Resolution 2.7 Å

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		4	.	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.								.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure														.													.	.									.	.	.	.	.	.	.
Query SS confidence														.													.	.									.	.	.	.	.	.	.
Query Sequence		T	F	T	A	E	E	K	A	S	V	F	E	.	L	W	K	N	G	T	G	F	S	E	I	A	.	.	N	I	L	G	S	K	P	G	.	.	.	.	.	.	.	T	I	F	T	M	L	R	D	T	G	G	I	K	P	H	E	R	K	R	A	V	A	H	L	T	L	S	E	R	E	E	I	R	A	G	L	S	A
Query Conservation														.													.	.									.	.	.	.	.	.	.
Alig confidence														.													.	.									.	.	.	.	.	.	.											.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.
Template Sequence		G	F	T	Q	G	D	V	G	L	A	M	G	K	L	Y	G	N	D	F	S	Q	T	T	I	S	R	F	E	A	L	N	L	S	F	K	N	M	S	K	L	K	P	L	L	E	K	W	L	N	D	A	E	.	.	.	.	.	.	.	R	K	K	R	T	S	I	E	T	N	I	R	V	A	L	E	K	S	F	L	E
Template Known Secondary structure		T														S	S													T	T		S																					.	.	.	.	.	.	.
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.								.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		74	.	.						.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.
Query SS confidence					.	.	.	.	.
Query Sequence		K	M	S	.	.	.	.	.	I	R	A	I	A	T	A	L	N	R	S	P	S	T	I	S	R	E	V	Q
Query Conservation					.	.	.	.	.
Alig confidence					.	.	.	.	.
Template Conservation
Template Sequence		N	Q	K	P	T	S	E	E	I	T	M	I	A	D	Q	L	N	M	E	K	E	V	I	R	V	W	F	S
Template Known Secondary structure			S	S														T
Template Predicted Secondary structure
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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