Job Description P0CF88 Confidence 99.51% Date Thu Jan 5 11:31:46 GMT 2012 Rank 17 Aligned Residues 161 % Identity 16% Template c1bcoA_ PDB info PDB header:transposase Chain: A: PDB Molecule:bacteriophage mu transposase; PDBTitle: bacteriophage mu transposase core domain Resolution 2.40 Å

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		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240					.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.			.																						.
Query SS confidence																					.	.	.	.			.																						.
Query Sequence		S	R	N	I	D	N	R	R	S	L	G	H	W	E	G	D	L	V	S	.	.	.	.	G	T	.	K	N	S	H	I	A	T	L	V	D	R	K	S	R	Y	T	I	I	V	R	L	.	R	G	K	D	S	V	S	V	N	Q	A	L	T	D	K	F	L	S	L	P	S	E	L	R	K	S	L	T	W	D	R	G
Query Conservation																					.	.	.	.			.																						.
Alig confidence																					.	.	.	.			.																						.
Template Conservation
Template Sequence		H	L	D	A	M	Q	W	I	N	G	D	G	Y	L	H	N	V	F	V	R	W	F	N	G	D	V	I	R	P	K	T	W	F	W	Q	D	V	K	T	R	K	I	L	G	W	R	C	D	V	S	E	N	I	D	S	I	R	L	S	F	M	D	V	V	T	R	Y	G	I	P	E	D	F	H	I	T	I	D	N	T
Template Known Secondary structure					T	T	T										S	B					T	T	S													T	T	T										S	S																					S	S								T
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		296	.	.	.	300	.																				.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.				.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.												.								.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.												.								.	.	.	.	.	.	.	.	.
Query Sequence		M	E	L	A	R	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	F	T	V	S	T	G	V	K	V	Y	F	C	D	P	Q	S	P	W	Q	R	G	T	.	.	.	N	E	N	T	N	G	L	I	R	Q	Y	.	F	P	K	K	T	C	L	.	.	.	.	.	.	.	.	.
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.												.								.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.												.								.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	G	A	A	N	K	W	L	T	G	G	A	P	N	R	Y	R	F	K	V	K	E	D	D	P	K	G	L	F	L	L	M	G	A	K	M	H	W	T	S	V	V	A	G	K	G	W	G	Q	A	K	P	V	E	R	A	F	G	V	G	G	L	E	E	Y	V	D	K	H	P	A	L	A	G	A	Y	T	G	P	Y
Template Known Secondary structure		T	S	T	T	T	T	T	T	S				T	T	T	T	B	S		B													T						S	S	S		T	T						S	S		S	S	G	G	G	S	G	G	G	G	G	G	T	T	T	T		G	G	G	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
								344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.					.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure		.	.	.	.	.	.																						.	.	.	.
Query SS confidence		.	.	.	.	.	.																						.	.	.	.
Query Sequence		.	.	.	.	.	.	A	Q	Y	T	Q	H	E	L	D	L	V	A	A	Q	L	N	N	R	P	R	K	.	.	.	.	T	L	K	F	K	T	P	K	E	I	I	E	R	G	V	A	L	T
Query Conservation		.	.	.	.	.	.																						.	.	.	.
Alig confidence		.	.	.	.	.	.																						.	.	.	.
Template Conservation
Template Sequence		G	D	R	A	V	D	A	E	L	F	L	K	T	L	A	E	G	V	A	M	F	N	A	R	T	G	R	E	T	E	M	C	G	G	K	L	S	F	D	D	V	F	E	R	E	Y	A	R	T
Template Known Secondary structure		T	T	T																										S	T	T	T	T	T	T												T	T	S
Template Predicted Secondary structure
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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