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Job DescriptionP76041
Confidence100.00%DateThu Jan 5 12:17:40 GMT 2012
Rank93Aligned Residues339
% Identity16%Templated1hvxa2
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution2.00

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   47..50.........60.........70.........80.........90... ......100.... .....110.....
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Query Sequence  SDVVLITYADQFHSNDLKPLPTFNQFYHQWLQSIFSHVHLLPFYPWS. . SDDGFSVIDYH. . . . . . . . . QVASEAGEWQD
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Template Sequence  NGTMMQYFEWYLPDDG. TLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGTKAQ
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TT

SSS.
TT




SSSTT

SSSTT
SS
S
BTTBSS
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   5....10.........20 .........30.........40.........50.........60.........70.........80...
 
   116...120.... .....130..... ....140.. .......150.........
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Query Sequence  IQQLGECSH. . . . . LMFDFVCNHMS. . AKSEWFK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . NYLQQHPGFEDFFIAVD
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Template Sequence  YLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYHFDG
Template Known Secondary structure  TT


S


STT
S

B

TTTTTSS



B
GGG
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   84.....90.........100.........110.........120.........130.........140.........150.........160...
 
   160.........170.........180.........190.........200.........210......... 220.........230........
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Query Sequence  PQTDLSAVTRPRALPLLTPFQMRDHSTRHLWTTFSDDQIDLNYRSPEVLLAMVDVLLCYL. AKGAEYVRLDAVGFMWKEP
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Template Sequence  VDWDESRKLSRIYKFRGIGKAWDWEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHI. . . .
Template Known Secondary structure  TTTT
STT



SS


TTS




SS
TT



TTGGGS....
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   164.....170.........180.........190.........200.........210.........220.........230.........
 
   239240.........250.........260.. .......270.........280.........290.........300.........310.......
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Query Sequence  GTSCIHLEKTHLIIKLLRSIIDNV. APGTVIITETNVPHKDNIAYFGAGDDEAHMVYQFSLPPLVLHAVQKQNVEALCAW
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Template Sequence  . . . . . . . . . KFSFFPDWLSYVRSQTGKPLFTVGEYWSYDINKLHNYIMKTNGTMSLFDAPLHNKFYTASKSGGTFDMRTL
Template Known Secondary structure  .........
TT







S
TTT
S
TTT
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GGGT
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   240.........250.........260.........270.........280.........290.........300.........310
 
   318.320.........330.........340.........350.........360.........370.........380.........390.......
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Query Sequence  AQNLTLPSSNTTWFNFLASHDGIGLNPLRGLLPESEILELVEALQQEGALVNWKNNPDGTRSPYEINVTYMDALSRRESS
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Template Sequence  MTNTLMKDQPTLAVTFVDNHDTEPGQALQSWVDP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTT

GGGS

TTTSTTSTT




T..............................................
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   311........320.........330.........340....
 
   398.400.........410.........420.........430.........440.........450.........460.........470.......
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Query Sequence  DEERCARFILAHAILLSFPGVPAIYIQSILGSRNDYAGVEKLGYNRAINRKKYHSKEITRELNDEATLRHAVYHELSRLI
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Template Sequence  . . . . WFKPLAYAFILTRQEGYPCVFYGDYYGIPQYNIPS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LKSKIDPLL
Template Known Secondary structure  ....TTSSSS
BGGGTB

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   345....350.........360.........370......... 380........
 
   478.480.
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Query Sequence  TLRR
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Template Sequence  IARR
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   389390..
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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