Return to main results Retrieve Phyre Job Id

Job DescriptionP76041
Confidence100.00%DateThu Jan 5 12:17:40 GMT 2012
Rank78Aligned Residues370
% Identity14%Templated1eh9a3
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution3.00

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  RRKKHWDESD. VVLITYADQFHSNDLKPLPTFNQFYHQWLQSIFSHVHLLPFYPWS. . SDDGFSVIDYHQVASEAGEWQD
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Template Sequence  NNETFLKKEDLIIYEIHVGTFTPE. . GTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEG
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   92.......100.........110..... ....120.........130.........140.........150.........160.........
 
   116...120.... .....130.........140.........150.........160.........170.........180.........190
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Query Sequence  IQQLGECSH. . . . . LMFDFVCNHMSAKSEWFKNYLQQHPGFEDFFIAVDPQTDLSAVTRPRALPLLTPFQMRDHSTRHLW
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Template Sequence  FRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVK. . . . . . . LGPYFSQKYKTP. . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT


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SSS

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Query Sequence  TTFSDDQIDLNYRSPEVLLAMVDVLLCYL. AKGAEYVRLDAVGFMWKEPGTSCIHLEKTHLIIKLLRSIIDNVAPGTVII
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Template Sequence  . . WGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAIIDTSPK. . . . . . . . . HILEEIADVVHKYNR. . IVI
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   215....220.........230.........240.........250.........260... ......270........ .280.
 
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Query Sequence  TETNVPHKDNIAYFGAGDDEAHMVYQFSLPPLVLHAVQKQNVEAL. . . . . . . CAWAQNLTLPSSNTTWFNFLASHDGIGL
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Template Sequence  AESDLNDPRVVNPKEKCGYNIDAQWVDDFHHSIHAYLTGERQGYYTDFGNLDDIVKSYKDVFVYDGKYSNFRRKTHGEPV
Template Known Secondary structure 


S

TTTTS
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   282.......290.........300.........310.........320.........330.........340.........350.........360.
 
   343......350.........360.........370.........380.........390.........400.........410.........420..
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Query Sequence  NPLRGLLPESEILELVEALQQEGALVNWKNNPDGTRSPYEINVTYMDALSRRESSDEERCARFILAHAILLSFPGVPAIY
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Template Sequence  GELDG. . . . . . . . . . . . . . . . . CNFVVYIQNHDQVGNRGKG. . . . . . . . . . ERIIKLVDRESYKIAAALYLLSPYIPMIF
Template Known Secondary structure 
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G.................GG

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Query Sequence  IQSILGSRNDYAGVEKLGYNRAIN. . . . . . . . . . . RKKYHSKEIT. RELNDEATLRHAVYHELSRLITLRRSHNE
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Template Sequence  MGEEYGEENPFYFFSDFSDSKLIQGVREGRKKENGQDTDPQDESTFNASKLSWKIDEEIFSFYKILIKMRKELSI
Template Known Secondary structure  SSGGGT











STTT


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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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