Return to main results Retrieve Phyre Job Id

Job DescriptionP76041
Confidence100.00%DateThu Jan 5 12:17:40 GMT 2012
Rank89Aligned Residues342
% Identity15%Templated1e43a2
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution1.7

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   47..50..... ....60.........70.........80.........90... ......100.... .....110....
Predicted Secondary structure 


.


















..










.........







Query SS confidence 








.





































. .










. . . . . . . . .









Query Sequence  SDVVLITYA. DQFHSNDLKPLPTFNQFYHQWLQSIFSHVHLLPFYPWS. . SDDGFSVIDYH. . . . . . . . . QVASEAGEWQ
Query Conservation    


 
  .  
       
      



  


  
 
 


 
 .. 
 


  

 ......... 


  

 
Alig confidence 








.
..


































..










.........









Template Conservation         
   ..    


  

  




  


  
 
 

         

     
          


  

  
Template Sequence  NGTLMQYFEWY. . TPNDGQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKS
Template Known Secondary structure 





TT..

SSS
T




SSSTT

SSSTT
SS
S
BTTBSS
SS

Template Predicted Secondary structure 


..















































Template SS confidence 















































































   2.......10.. .......20.........30.........40.........50.........60.........70.........
 
   115....120.... .....130.........140.........150......... 160.........170.....
Predicted Secondary structure 
.....


















..............















Query SS confidence 









. . . . .


































. . . . . . . . . . . . . .















Query Sequence  DIQQLGECSH. . . . . LMFDFVCNHMSAKSEWFKNYLQQHPGFEDFFIAVD. . . . . . . . . . . . . . PQTDLSAVTRPRALPL
Query Conservation 


 

   
.....



 
 



    

           
 
    ..............                
Alig confidence 









.....


































..............















Template Conservation 

  

   
  

 



 
 

                                                        
Template Sequence  ELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFD
Template Known Secondary structure  TT


S


STT
S

B

TTTTTSS



B
GGG
Template Predicted Secondary structure 






























































Template SS confidence 















































































   80.........90.........100.........110.........120.........130.........140.........150.........
 
   176...180.........190.... .....200.........210......... 220.........230.......
Predicted Secondary structure 














.................









.








Query SS confidence 


















. . . . . . . . . . . . . . . . .
























.

















Query Sequence  LTPFQMRDHSTRHLWTTFS. . . . . . . . . . . . . . . . . DDQIDLNYRSPEVLLAMVDVLLCYL. AKGAEYVRLDAVGFMWKE
Query Conservation                   
 .................   



  

 

  
      

.  







 
  
   
Alig confidence 


















.................
























.














...
Template Conservation                                          


  
  
   
      
    





 

   
...
Template Sequence  GADWDESRKISRIFKFRGEGKAWDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHI. . .
Template Known Secondary structure  S
BTTTTB


SSS



SSS

TTS




SS
TT
T

TTGGGS...
Template Predicted Secondary structure 























































...
Template SS confidence 















































































   160.........170.........180.........190.........200.........210.........220.........230......
 
   238.240.........250......... 260.........270.........280.........290.........300.........310......
Predicted Secondary structure 









.

























Query SS confidence 





















.
























































Query Sequence  PGTSCIHLEKTHLIIKLLRSII. DNVAPGTVIITETNVPHKDNIAYFGAGDDEAHMVYQFSLPPLVLHAVQKQNVEALCA
Query Conservation                    
   .    
    


                                          
  
Alig confidence  ..........











.
























































Template Conservation  ..........   
                   

                       
                     
Template Sequence  . . . . . . . . . . KFSFLRDWVQAVRQATGKEMFTVAEYWQNNAGKLENYLNKTSFNQSVFDVPLHFNLQAASSQGGGYDMRK
Template Known Secondary structure  ..........

S





S
TTT
S
TTT
S
GGG
Template Predicted Secondary structure  ..........























Template SS confidence 















































































   237..240.........250.........260.........270.........280.........290.........300......
 
   317..320.........330.........340.........350.........360.........370.........380.........390......
Predicted Secondary structure 























































Query SS confidence 















































































Query Sequence  WAQNLTLPSSNTTWFNFLASHDGIGLNPLRGLLPESEILELVEALQQEGALVNWKNNPDGTRSPYEINVTYMDALSRRES
Query Conservation                  

 


                                    
                     
Alig confidence 






































.........................................
Template Conservation                
 

 


  
              .........................................
Template Sequence  LLNGTVVSKHPLKSVTFVDNHDTQPGQSLESTVQTWFKP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTTT
STTT
GGGS

TTTSTTSTT




TTT.........................................
Template Predicted Secondary structure 

















.........................................
Template SS confidence 















































































   307..310.........320.........330.........340.....
 
   397..400.........410.........420.........430.........440.........450.........460.........470......
Predicted Secondary structure 







































Query SS confidence 















































































Query Sequence  SDEERCARFILAHAILLSFPGVPAIYIQSILGSRNDYAGVEKLGYNRAINRKKYHSKEITRELNDEATLRHAVYHELSRL
Query Conservation         
  

  
 

 

 
 





 
           
      
    
                
    
 
Alig confidence  .........

































.............................







Template Conservation  ......... 
 
  
   

 
 





 
  
        .............................       
Template Sequence  . . . . . . . . . LAYAFILTRESGYPQVFYGDMYGTKGDSQREIPA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . LKHKIEPI
Template Known Secondary structure  .........SSSS



SSTT



.............................
Template Predicted Secondary structure  .........
















.............................
Template SS confidence 















































































   346...350.........360.........370......... 380.......
 
   477..480..
Predicted Secondary structure 
Query SS confidence 





Query Sequence  ITLRRS
Query Conservation 
 


 
Alig confidence 





Template Conservation     

 
Template Sequence  LKARKQ
Template Known Secondary structure 
Template Predicted Secondary structure 

Template SS confidence 





   388.390...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions