Job Description P76041 Confidence 100.00% Date Thu Jan 5 12:17:40 GMT 2012 Rank 2 Aligned Residues 553 % Identity 23% Template c3ucqA_ PDB info PDB header:transferase Chain: A: PDB Molecule:amylosucrase; PDBTitle: crystal structure of amylosucrase from deinococcus geothermalis Resolution 1.97 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.								.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																						.	.	.	.	.	.	.																			.								.	.
Query SS confidence																						.	.	.	.	.	.	.																			.								.	.
Query Sequence		K	Q	K	I	T	D	Y	L	D	E	I	Y	G	G	T	F	T	A	T	H	.	.	.	.	.	.	.	L	Q	K	L	V	T	R	L	E	S	A	K	R	L	I	T	Q	R	.	R	K	K	H	W	D	E	.	.	S	D	V	V	L	I	T	Y	A	D	Q	F	H	S	N	D	L	K	P	L	P	T	F	N	Q
Query Conservation																						.	.	.	.	.	.	.																			.								.	.
Alig confidence																						.	.	.	.	.	.	.																			.								.	.														.	.	.	.
Template Conservation																																																																						.	.	.	.
Template Sequence		G	E	D	L	W	E	S	L	R	A	V	Y	G	D	Q	V	R	A	L	P	G	R	L	L	E	V	M	L	H	A	Y	H	A	R	P	A	E	L	R	R	L	D	E	A	R	L	L	R	P	D	W	L	Q	R	P	E	M	V	G	Y	V	A	Y	T	D	R	F	A	.	.	.	.	G	T	L	K	G	V	E	E
Template Known Secondary structure														G	G	G	G	G	G																S															T	T	G	G	G	S	T	T													.	.	.	.	S	S						T
Template Predicted Secondary structure																																																																						.	.	.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.					.	.	.	.	.	.	.	110
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90				.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.						.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																					.	.	.																																			.	.	.	.	.
Query SS confidence																					.	.	.																																			.	.	.	.	.
Query Sequence		F	Y	H	Q	W	L	Q	S	I	F	S	H	V	H	L	L	P	F	Y	.	.	.	P	W	S	S	D	D	G	F	S	V	I	D	Y	H	Q	V	A	S	E	A	G	E	W	Q	D	I	Q	Q	L	G	E	C	S	H	.	.	.	.	.	L	M	F	D	F	V	C	N	H	M	S	A	K	S	E	W	F	K	N
Query Conservation																					.	.	.																																			.	.	.	.	.
Alig confidence																					.	.	.																																			.	.	.	.	.
Template Conservation
Template Sequence		R	L	D	Y	L	E	G	L	G	V	K	Y	L	H	L	M	P	L	L	R	P	R	E	G	E	N	D	G	G	Y	A	V	Q	D	Y	R	A	V	R	P	D	L	G	T	M	D	D	L	S	A	L	A	R	A	L	R	G	R	G	I	S	L	V	L	D	L	V	L	N	H	V	A	R	E	H	A	W	A	Q	K
Template Known Secondary structure		T							T	T														S	S			G	G	G	T	S									G	G	G																T	T										S				T	T	S
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.					.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.					.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.																										.	.	.	.
Query SS confidence																					.	.	.	.																										.	.	.	.
Query Sequence		Y	L	Q	Q	H	P	G	F	E	D	F	F	I	A	V	D	P	Q	T	.	.	.	.	D	L	S	A	V	T	R	P	R	A	L	P	L	L	T	P	F	Q	M	R	D	H	S	T	R	.	.	.	.	H	L	W	T	T	F	S	D	D	Q	I	D	L	N	Y	R	S	P	E	V	L	L	A	M	V	D	V	L
Query Conservation																					.	.	.	.																										.	.	.	.
Alig confidence																					.	.	.	.																										.	.	.	.
Template Conservation
Template Sequence		A	R	A	G	D	P	K	Y	R	A	Y	F	H	L	F	P	D	R	R	G	P	D	A	F	E	A	T	L	P	E	I	F	P	D	F	A	P	G	N	F	S	W	D	E	E	I	G	E	G	E	G	G	W	V	W	T	T	F	N	S	Y	Q	W	D	L	N	W	A	N	P	D	V	F	L	E	F	V	D	I	I
Template Known Secondary structure				T	T						T	T	B				S	S	S								T	T				S		T	T	T	S		S	S					T	T	S	S	S	S	S							S	S	S	T	T				B		T	T	S
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.				.	.	290	.	.
Predicted Secondary structure																																																																										.	.	.
Query SS confidence																																																																										.	.	.
Query Sequence		L	C	Y	L	A	K	G	A	E	Y	V	R	L	D	A	V	G	F	M	W	K	E	P	G	T	S	C	I	H	L	E	K	T	H	L	I	I	K	L	L	R	S	I	I	D	N	V	A	P	G	T	V	I	I	T	E	T	N	V	P	H	K	D	N	I	A	Y	F	G	A	G	D	.	.	.	D	E	A	H	M
Query Conservation																																																																										.	.	.
Alig confidence																																																																										.	.	.
Template Conservation
Template Sequence		L	Y	L	A	N	R	G	V	E	V	F	R	L	D	A	I	A	F	I	W	K	R	L	G	T	D	C	Q	N	Q	P	E	V	H	H	L	T	R	A	L	R	A	A	A	R	I	V	A	P	A	V	A	F	K	A	E	A	I	V	A	P	A	D	L	I	H	Y	L	G	T	R	A	H	H	G	K	V	S	D	M
Template Known Secondary structure						T	T	T							T	T	G	G	G	S				T	T	S		S	S	S																				T	T															G	G	G	T			S	S	S	S			S		S
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	Q	F	S	L	P	P	L	V	L	H	A	V	Q	K	Q	N	V	E	A	L	C	A	W	A	Q	N	L	T	L	P	S	S	N	T	T	W	F	N	F	L	A	S	H	D	G	I	G	L	N	P	L	R	G	L	L	P	E	S	E	I	L	E	L	V	E	A	L	Q	Q	E	G	A	L	V	N	W	K	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Y	H	N	S	L	M	V	Q	L	W	S	S	L	A	S	R	N	T	R	L	F	E	E	A	L	R	A	F	P	P	K	P	T	S	T	T	W	G	L	Y	V	R	C	H	D	D	I	G	W	A	I	S	D	E	D	A	A	R	A	G	L	N	G	A	A	H	R	H	F	L	S	D	F	Y	S	G	Q	F	P
Template Known Secondary structure																													T						T	T							S			S	S		B												T	T															T	T		S	T
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390																	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	P	D	G	T	R	S	P	Y	E	I	N	V	T	Y	M	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	R	R	E	S	S	D	E	E	R	C	A	R	F	I	L	A	H	A	I	L	L	S	F	P	G	V	P	A	I	Y	I	Q	S	I	L	G	S	R	N	D	Y	A	G	V
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	S	F	A	R	G	L	V	F	Q	Y	N	P	V	N	G	D	R	R	I	S	G	S	A	A	S	L	A	G	L	E	A	A	L	E	T	G	D	P	G	R	I	E	D	A	V	R	R	L	L	L	L	H	T	V	I	L	G	F	G	G	V	P	L	L	Y	M	G	D	E	L	A	L	L	N	D	Y	A	F	E
Template Known Secondary structure		T									S			T	T	T													T	T																														S	S	S						T	T	G	G	G	T					G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
		437	.				.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.		.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure				.	.	.																																																										.
Query SS confidence				.	.	.																																																										.
Query Sequence		E	K	.	.	.	L	G	Y	N	R	A	I	N	R	K	K	Y	H	S	K	E	I	T	R	E	L	N	D	E	A	T	L	R	H	A	V	Y	H	E	L	S	R	L	I	T	L	R	R	S	H	N	E	F	H	P	D	N	N	F	T	I	D	.	T	I	N	S	S	V	M	R	I	P	R	S	N	A	D	G	N
Query Conservation				.	.	.																																																										.
Alig confidence				.	.	.																																																										.
Template Conservation
Template Sequence		D	V	P	E	H	A	P	D	N	R	W	V	H	R	P	Q	M	D	W	A	L	A	E	R	V	R	Q	E	P	S	S	P	A	G	R	V	N	T	G	L	R	H	L	L	R	V	R	R	D	T	P	Q	L	H	A	S	I	E	S	Q	V	L	P	S	P	D	S	R	A	L	L	L	R	R	D	H	P	L	G	G
Template Known Secondary structure		G	S	T	T	T	T	T		G	G	G	G	G																T	T	S																		T		G	G	G		T	T	S								S	S	T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		511	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590
		513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530							.	.	.	.	.	.	.	.	.	540	.	.	.			.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.														.	.
Query SS confidence																				.	.	.	.	.	.														.	.
Query Sequence		C	L	T	G	L	F	N	V	S	K	N	I	Q	H	V	N	I	T	.	.	.	.	.	.	N	L	H	G	R	D	L	I	S	E	V	D	I	.	.	L	G	N	E	I	T	L	R	P	W	Q	V	M	W	I	K
Query Conservation																				.	.	.	.	.	.														.	.
Alig confidence		.																		.	.	.	.	.	.														.	.
Template Conservation		.
Template Sequence		.	M	V	Q	V	Y	N	F	S	E	E	T	V	M	L	P	S	H	V	L	R	D	V	L	G	D	H	V	Q	D	R	L	S	G	S	A	F	R	L	D	R	P	T	V	R	L	E	G	Y	R	A	L	W	L	T
Template Known Secondary structure		.								S	S	S						T									S					T	T	T						S	S	S	S						T	T
Template Predicted Secondary structure		.
Template SS confidence
			591	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.