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Job DescriptionP76041
Confidence100.00%DateThu Jan 5 12:17:40 GMT 2012
Rank7Aligned Residues451
% Identity18%Templatec3edeB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:cyclomaltodextrinase; PDBTitle: structural base for cyclodextrin hydrolysis
Resolution1.71 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   33......40.........50.........60.. .......70.........80.........90
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Query Sequence  KRLITQRRKKHWDESDVVLITYADQFHSND. . . . . . . . . . . . . . . . . . . . . . LKPLPTFNQFYHQWLQSIFSHVHLLPFY
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Template Sequence  AREQGSAQRQGFGPGDAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHLDYIAGLGFTQLWPTPLV
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TT
TT




TT




S
GGGSS
TT
S



TTSTTS




TTT




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   92.......100.........110.........120.........130.........140.........150.........160.........170.
 
   91.. ......100.........110.........120.... .....130.........140.........150.........160.
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Query Sequence  PWS. . . . SDDGFSVIDYHQVASEAGEWQDIQQLGECSH. . . . . LMFDFVCNHMSAKSEWFKNYLQQHPGFEDFFIAVDPQ
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Template Sequence  ENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMK. . . . . DLPTPDWINYGGKF
Template Known Secondary structure 


SS
GGG

S
S
TTT

TT


SB

TT
GGGG.....S
SSTTSBGGGGS
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   172.......180.........190.........200.........210.........220.........230.. .......240......
 
   162.......170.........180.........190.........200.........210.........220 .........230.........240
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Query Sequence  TDLSAVTRPRALPLLTPFQMRDHSTRHLWTTFSDDQIDLNYRSPEVLLAMVDVLLCYLA. KGAEYVRLDAVGFMWKEPGT
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Template Sequence  VPTQHHRVAVQDPYAAQA. . . . DSENFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRIDTYGYS. . . . . .
Template Known Secondary structure 
B



GGGGS
TT

....SBSSTTS
BB
TTST
SSSGGGS......
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   247..250.........260.... .....270.........280.........290.........300.........310......
 
   241........250.........260.........270.........280....... ..290.........300.........310
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Query Sequence  SCIHLEKTHLIIKLLRSIIDNVAPGTVIITETNVPHKDNIAYFGAGD. . . . . . . DEAHMVYQFSLPPLVLHAVQKQN. . .
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Template Sequence  . . . . . . . DGAFLTEYTRRLMAEYPRLNMVGEEWSTRVPVVARWQRGKANFDGYTSHLPSLMDFPLVDAMRNALSKTGEEN
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TT




S
TTSTT


TT






B

TTSS
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   317..320.........330.........340.........350.........360.........370.........380.........
 
   311........320.........330.........340.........350.........360.........370.........380.........
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Query Sequence  . VEALCAWAQNLTLPSSNTTWFNFLASHDGIGLNPLRGLLPESEILELVEALQQEGALVNWKNNPDGTRSPYEINVTYMD
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Template Sequence  GLNEVYETLSLDYLYPEPQNLVLFGGNHDMARMFSAAG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTGGGGSS
GGGSS

TTS

TT..........................................
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   390.........400.........410.........420.......
 
   390.........400.........410.........420.........430.........440.........450.........460.........
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Query Sequence  ALSRRESSDEERCARFILAHAILLSFPGVPAIYIQSILGSRNDYAGVEKLGYNRAINRKKYHSKEITRELNDEATLRHAV
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Template Sequence  . . . . . . . . . . EDFDRWRMNLVFLMTMPRIPQFYSGDEILMTSTVKGRDDASYRRDFPGGWAGDKANAFSGAGLTSQQRAA
Template Known Secondary structure  ..........T
SSSTTGGGT




SS

GGGG



TTSSTT
SS
TTT
TT

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   428.430.........440.........450.........460.........470.........480.........490.......
 
   470.........480.........490.........500.........510.........520.........530 .........540.
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Query Sequence  YHELSRLITLRRSHNEFHPDNNFTIDTINSSVMRIPRSNADGNCLTGLFNVSKNIQHVNIT. . . . . . . . NLHGRDLISEV
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Template Sequence  QDLVRKLANWRKNQPVIHNGRLMHFGPE. ENTWVYFRYN. KDKRIMVAMNNNDKPMTLPTARFQEMLKGAPSGVDFLSGK
Template Known Secondary structure  T




B.TT
.SS
SSS
GGGGTT

BTTT

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   498.500.........510.........520..... ....530..... ....540.........550.........560.........570.....
 
   542. ......550.........
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Query Sequence  DI. LGNEITLRPWQVMWIK
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Template Sequence  TVGLGRELRLAPKSVVVIE
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SS
TT
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   576...580.........590....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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