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Job DescriptionP76041
Confidence100.00%DateThu Jan 5 12:17:40 GMT 2012
Rank6Aligned Residues445
% Identity29%Templatec2gdvA_
PDB info PDB header:transferaseChain: A: PDB Molecule:sucrose phosphorylase; PDBTitle: sucrose phosphorylase from bifidobacterium adolescentis2 reacted with sucrose
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   46...50.........60.........70.........80.........90. ........100.........110.........120...
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Query Sequence  ESDVVLITYADQFHSNDLKPLPTFNQFYHQWLQSIFSHVHLLPFYP. . WSSDDGFSVIDYHQVASEAGEWQDIQQLGECS
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Template Sequence  KNKVQLITYADRLGDGT. . . IKSMTDILRTRFDGVYDGVHILPFFTPFDGADAGFDPIDHTKVDERLGSWDDVAELSKTH
Template Known Secondary structure 
SS

SSSBSSSS...STTT
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SSSSSTTSS
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TTT

TTTS
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   2.......10........ .20.........30.........40.........50.........60.........70........
 
   124.....130.........140....... ..150.........160. ........170.........180.... .....190.....
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Query Sequence  HLMFDFVCNHMSAKSEWFKNYLQQ. . HPGFEDFFIAVDPQ. TDLSAVTRPRALPLLTPFQMRDH. . . . . STRHLWTTFSD
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Template Sequence  NIMVDAIVNHMSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGATEEDLAGIYRPRPGLPFTHYKFAGKTRLVWVSFTP
Template Known Secondary structure 
STTSGGGSTTGGGB
B
TT


TS

SSSS
STT
SSST
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   7980.........90.........100.........110.........120.........130.........140.........150........
 
   196...200.........210.........220.........230.........240.........250.........260.........270.....
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Query Sequence  DQIDLNYRSPEVLLAMVDVLLCYLAKGAEYVRLDAVGFMWKEPGTSCIHLEKTHLIIKLLRSIIDNVAPGTVIITETNVP
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Template Sequence  QQVDIDTDSDKGWEYLMSIFDQMAASHVSYIRLDAVGYGAKEAGTSCFMTPKTFKLISRLREEG. . VKRGLEILIEVHSY
Template Known Secondary structure  TB
TTSTT

TGGGS


TTS
SSS
..TTT



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   159160.........170.........180.........190.........200.........210.........220.. .......230......
 
   276...280.........290.........300.........310.........320.........330.........340. .....
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Query Sequence  HKDNIAYFGAGDDEAHMVYQFSLPPLVLHAVQKQNVEALCAWAQNLTLPSSNTTWFNFLASHDGIG. . . . . . . . . LNPLR
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Template Sequence  YKKQVEI. . . . ASKVDRVYDFALPPLLLHALSTGHVEPVAHWTDIRP. . . . . NNAVTVLDTHDGIGVIDIGSDQLDRSLK
Template Known Secondary structure  ....GGGSS
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S
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SS
B
STTTS

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TTS
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   237..240... ......250.........260.........270......... 280.........290.........300.......
 
   347..350.........360...... ...370.........380.........390.........400.........410.........420
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Query Sequence  GLLPESEILELVEALQQEGA. . . . . . LVNWKNNPDGTRSPYEINVTYMDALSRRESSDEERCARFILAHAILLSFPGVPA
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Template Sequence  GLVPDEDVDNLVNTIHANTHGESQAATGAAASNLDLYQVNSTYY. . . . . . . . . . . SALGCNDQHYIAARAVQFFLPGVPQ
Template Known Secondary structure 
SS
TTTSGGGSB
S
SSSB
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SSS
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   308.310.........320.........330.........340.........350. ........360.........370......
 
   421........430.........440.........450.........460.........470.........480.........490.........500
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Query Sequence  IYIQSILGSRNDYAGVEKLGYNRAINRKKYHSKEITRELNDEATLRHAVYHELSRLITLRRSHNEFHPDNNFTIDTINSS
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Template Sequence  VYYVGALAGKNDMELLRKTNNGRDINRHYYSTAEID. . . . . . ENLKRPVVKALNALAKFRNELDAF. DGTFSYTTDD. DT
Template Known Secondary structure  TT




BGGGGG


B
......TTS
GGG.GST.TT
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   377..380.........390.........400.........410.. .......420.........430...... ...440...... ..
 
   501........510.........520....
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Query Sequence  VMRIPRSNADGNCLTGLFNVSKNI
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Template Sequence  SISFTWRG. ETSQATLTFEPKRGL
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.SS

GGGG
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   449450...... ...460.........470.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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