Return to main results Retrieve Phyre Job Id

Job DescriptionP76041
Confidence100.00%DateThu Jan 5 12:17:40 GMT 2012
Rank52Aligned Residues381
% Identity12%Templatec2dh3A_
PDB info PDB header:transport protein, signaling proteinChain: A: PDB Molecule:4f2 cell-surface antigen heavy chain; PDBTitle: crystal structure of human ed-4f2hc
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   43......50.........60 .........70.........80.........90.........100.........110.........120.
Predicted Secondary structure 









.


































Query SS confidence 

















.




























































Query Sequence  HWDESDVVLITYADQFHS. NDLKPLPTFNQFYHQWLQSIFSHVHLLPFYPWSSDDGFSVIDYHQVASEAGEWQDIQQLGE
Query Conservation   
    


 
    
  .     
      



  


  
 
 


 
  
 


  

  


  

 



 

 
Alig confidence 

















.
































.


























Template Conservation   
    


 
           

  

  





 


  
 
 

    .   
   
   

   

  


 

 
Template Sequence  KWWHTGALYRIGDLQAFQGHGAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQ. KDDVAQTDLLQIDPNFGSKEDFDSLLQ
Template Known Secondary structure 
GGGSS


SS

SGGGTTT



.TT
STT
TTT

Template Predicted Secondary structure 

























.

















Template SS confidence 















































































   116...120.........130.........140.........150.........160....... ..170.........180.........190....
 
   122.. .....130.........140.........150.........160.........170.........180.........190......
Predicted Secondary structure 
.....



















































Query SS confidence 


. . . . .







































































Query Sequence  CSH. . . . . LMFDFVCNHMSAKSEWFKNYLQQHPGFEDFFIAVDPQTDLSAVTRPRALPLLTPFQMRDHSTRHLWTTFSDD
Query Conservation    
.....



 
 



    

           
 
                                     
   
Alig confidence 


.....










.



........................................................
Template Conservation    
  

 



 
 

  .   
........................................................
Template Sequence  SAKKKSIRVILDLTPNYRG. ENSW. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT


TTTTS.SSTT........................................................
Template Predicted Secondary structure 








.



........................................................
Template SS confidence 















































































   195....200.........210... ....
 
   197..200.........210.........220.........230.........240.........250.........260.........270......
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  QIDLNYRSPEVLLAMVDVLLCYLAKGAEYVRLDAVGFMWKEPGTSCIHLEKTHLIIKLLRSIIDNVAPGTVIITETNVPH
Query Conservation   



  

 

  
      

  







 
  
                     
       
    


     
Alig confidence  ...


































...........






























Template Conservation  ...
      
   
      
 
 





 
     ...........                       
 
     
Template Sequence  . . . FSTQVDTVATKVKDALEFWLQAGVDGFQVRDIENL. . . . . . . . . . . KDASSFLAEWQNITKGFSEDRLLIAGTNSSD
Template Known Secondary structure  ...SSS

TTT



GGGS...........TT
SS

S


Template Predicted Secondary structure  ...









...........







Template SS confidence 















































































   218.220.........230.........240.........250.. .......260.........270.........280...
 
   277..280.........290.........300.........310.........320.........330.........340.........350......
Predicted Secondary structure 










































Query SS confidence 















































































Query Sequence  KDNIAYFGAGDDEAHMVYQFSLPPLVLHAVQKQNVEALCAWAQNLTLPSSNTTWFNFLASHDGIGLNPLRGLLPESEILE
Query Conservation                                       
                  

 


                  
Alig confidence 



















...............................................












Template Conservation                      ...............................................             
Template Sequence  LQQILSLLESNKDLLLTSSY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LSDSGSTGEHTKS
Template Known Secondary structure  TS
TT

ST...............................................T


SS
TT
Template Predicted Secondary structure 








...............................................



Template SS confidence 















































































   284.....290.........300... ......310......
 
   357..360.........370.........380.........390.........400.........410.........420.........430......
Predicted Secondary structure 

















































Query SS confidence 















































































Query Sequence  LVEALQQEGALVNWKNNPDGTRSPYEINVTYMDALSRRESSDEERCARFILAHAILLSFPGVPAIYIQSILGSRNDYAGV
Query Conservation                    
                            
  

  
 

 

 
 





 
        
Alig confidence 


























................




































Template Conservation                    
  
     ................                 
 
 

 


 
        
Template Sequence  LVTQYLNATGNRWCSWSLSQARLLTSF. . . . . . . . . . . . . . . . LPAQLLRLYQLMLFTLPGTPVFSYGDEIGLDAAALPG
Template Known Secondary structure  TTS



S
SSS
GGGT................S
GGGSSSTTTTTT

STTSSS
Template Predicted Secondary structure 

















................













Template SS confidence 















































































   317..320.........330.........340... ......350.........360.........370.........380
 
   437..440... ......450.........460.........470.........480.........490.........500.........510.
Predicted Secondary structure 






.....

























Query SS confidence 






. . . . .



































































Query Sequence  EKLGYNR. . . . . AINRKKYHSKEITRELNDEATLRHAVYHELSRLITLRRSHNEFHPDNNFTIDTINSSVMRIPRSNADG
Query Conservation     
   .....   
    
                
    
 

 


  


  
           
 
  
     
Alig confidence 






.....




















































.













Template Conservation           
                                  
  

     
  
       .   
 

 
     
Template Sequence  QPMEAPVMLWDESSFPDIPGAVSANMTVKGQSEDPGSLLSLFRRLSDQRSKERSLLHGDFHAFSA. GPGLFSYIRHWDQN
Template Known Secondary structure 

SSS



SSGGG

SSGGG

GGGS
TTS
STTTS




.
TT

TTS
Template Predicted Secondary structure 




































.





Template SS confidence 















































































   381........390.........400.........410.........420.........430.........440..... ....450.........
 
   512.......520.........530 .........540 .........550.........
Predicted Secondary structure 







..........





.......







Query SS confidence 


















. . . . . . . . . .









. . . . . . .


















Query Sequence  NCLTGLFNVSKNIQHVNIT. . . . . . . . . . NLHGRDLISE. . . . . . . VDILGNEITLRPWQVMWIK
Query Conservation     


 
 
       
 ..........      
   .......       
 
 

   


Alig confidence 


















..........









.......


















Template Conservation     


 
 
       
          
                        
 
 
 

 

 
Template Sequence  ERFLVVLNFGDVGLSAGLQASDLPASASLPAKADLLLSTQPGREEGSPLELERLKLEPHEGLLLR
Template Known Secondary structure 

SSS




S
S

GGG


SSSTTS
TTSSSS

TT
Template Predicted Secondary structure 


































Template SS confidence 
































































   460.........470.........480.........490.........500.........510.........520....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions