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Job DescriptionP76041
Confidence100.00%DateThu Jan 5 12:17:40 GMT 2012
Rank18Aligned Residues453
% Identity18%Templatec1wzaA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:alpha-amylase a; PDBTitle: crystal structure of alpha-amylase from h.orenii
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60 .........70........ .80.........90.........100.........110..
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Query Sequence  WDESDVVLITYADQFHS. . . NDLKPLPTFNQFYHQWLQ. . . . . . . . SIFSHVHLLPFYPWSSDDGFSVIDYHQVASEAGE
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Template Sequence  FEKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKSPSYHGYDVTDYYKINPDYGT
Template Known Secondary structure 






GGGS

SSSSS


T

S
TT

SS


S



SSSS

S
S
GGG

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   28.30.........40.........50.........60.........70.........80.........90.........100.......
 
   113......120.... .....130.........140....... ..150.........160.........170.........180......
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Query Sequence  WQDIQQLGECSH. . . . . LMFDFVCNHMSAKSEWFKNYLQQ. HPGFEDFFIAVDPQTDLSAVTRPRALPLLTPFQMRDHST
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Template Sequence  LEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGG. . . . . . RVWHYSPT
Template Known Secondary structure  TT



SB

TTST
TT
TTGGGB
B

S




B
SSS
B......
STT
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   108.110.........120.........130.........140.........150.........160.........170... ......180.
 
   187..190.........200.........210.........220.........230.........240.........250.........260......
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Query Sequence  RHLWTTFSDDQIDLNYRSPEVLLAMVDVLLCYLAKGAEYVRLDAVGFMWKEPGTSCIHLEKTHLIIKLLRSIIDNVAPGT
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Template Sequence  GMYYGYFWSGMPDLNYNNPEVQEKVIGIAKYWLKQGVDGFRLDGAMHIFPP. . . . . AQYDKNFTWWEKFRQEIE. EVKPV
Template Known Secondary structure 
SS
TTS
BB
TTSTT




TTS
G.....GGTTT.TTS

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   182.......190.........200.........210.........220.........230.. .......240.........250 .....
 
   267..270.........280.........290.........300.........310.........320.........330.........340......
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Query Sequence  VIITETNVPHKDNIAYFGAGDDEAHMVYQFSLPPLVLHAVQKQNVEALCAWAQNLTLPSSNTTWFNFLASHDGIGLNPLR
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Template Sequence  YLVGEVWDISETVAPYFK. . . YGFDSTFNFKLAEAVIATAKAGFPFGFNKKA. . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 

S
GGGGT...TT
SB
T
S............................
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   256...260.........270... ......280.........290.........300....
 
   347..350.........360.........370.........380.........390.........400.........410.........420......
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Query Sequence  GLLPESEILELVEALQQEGALVNWKNNPDGTRSPYEINVTYMDALSRRESSDEERCARFILAHAILLSFPGVPAIYIQSI
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Template Sequence  . . . KHIYGVYDREVGFGNYIDAPFLTNHDQNRILDQLG. . . . . . . . . . . . . . . QDRNKARVAASIYLTLPGNPFIYYGEE
Template Known Secondary structure  ...T
TTS


B
BS

TTS

TT...............T
TTSSS

TTGG
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   305....310.........320.........330......... 340.........350.........360......
 
   427..430... ......440.........450.........460.........470.........480.........490........
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Query Sequence  LGSRNDY. . . . . . . . AGVEKLGYNRAINRKKYHSKEITRELNDEATLRHAVYHELSRLITLRRSHNEFHPDNNFTIDTIN
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Template Sequence  IGMRGQGPHEVIREPFQWYNGSGEGETYWEPAMYNDGFTSVEQEEKNLDSLLNHYRRLIHFRNENPVFYTGKIEIIN. GG
Template Known Secondary structure  GT



SST




SSS

TT


SS

TTTTTT

TT
TTS
TS
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   367..370.........380.........390.........400.........410.........420.........430.........440... ..
 
   499500.........510.........520.........530.........540...... ...550.........
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Query Sequence  SSVMRIPRSNADGNCLTGLFNVSKNIQHVNITNLHGRDLISEVDILGN. . . . . . . . EITLRPWQVMWIK
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Template Sequence  LNVVAFRRYN. DKRDLYVYHNLVNRPVKIKVASGNWTLLFNSGDKEITPVEDNNKLMYTIPAYTTIVLE
Template Known Secondary structure  TT
.SS

SSS
SS
SSSS




SS
TT
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   446...450..... ....460.........470.........480.........490.........500.........510...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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