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Job DescriptionP76041
Confidence100.00%DateThu Jan 5 12:17:40 GMT 2012
Rank13Aligned Residues414
% Identity20%Templatec1jibA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:neopullulanase; PDBTitle: complex of alpha-amylase ii (tva ii) from thermoactinomyces2 vulgaris r-47 with maltotetraose based on a crystal soaked3 with maltohexaose.
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   40.........50.........60... ......70.........80.........90......
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Query Sequence  RKKHWDESDVVLITYADQFHSNDL. . . . . . . . . . . . . . . . . . . . . . . KPLPTFNQFYHQWLQSIFSHVHLLPFYPWSSDD
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Template Sequence  TTPEWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFASPSHH
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T


GGGT



TTT

TT




TT



TT





TT
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   123......130.........140.........150.........160.........170.........180.........190.........200..
 
   97..100.........110.........120.... .....130.........140...... ...150.........160.........
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Query Sequence  GFSVIDYHQVASEAGEWQDIQQLGECSH. . . . . LMFDFVCNHMSAKSEWFKNYLQ. . QHPGFEDFFIAVDPQTDLSAVTR
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Template Sequence  KYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVS. . . . . .
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S
S
TTT

TTT


SB

TTSGGG
TTGGGS
B
SSS

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   203......210.........220.........230.........240.........250.........260.........270......
 
   170.........180.........190.........200.........210.........220.........230.........240.........
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Query Sequence  PRALPLLTPFQMRDHSTRHLWTTFSDDQIDLNYRSPEVLLAMVDVLLCYLAKGAEYVRLDAVGFMWKEPGTSCIHLEKTH
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Template Sequence  . . . . . . . . . . . KTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWMEQGIDGWRLNVANEV. . . . . . . . . . . . . DH
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SSS
SB
BSSSS
TT
BB

TTSTTT

TTGGGS.............
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   277..280.........290.........300.........310.........320.........330 ..
 
   250.........260.........270.........280.........290.........300......... 310.........320.......
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Query Sequence  LIIKLLRSIIDNVAPGTVIITETNVPHKDNIAYFGAGDDEAHMVYQFSLPPLVLHAVQKQ. . NVEALCAWAQNLTLPSSN
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Template Sequence  AFWREFRRLVKSLNPDALIVGEIWHDASGWLM. . . . . GDQFDSVMNYLFRESVIRFFATGEIHAERFDAELTRARMLYPE
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TT


SS

TTTTT.....TTS
SB
TS

S
TTS
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   333......340.........350.........360.... .....370.........380.........390.........400.......
 
   328.330 .........340.........350.........360.........370.........380.........390.........400....
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Query Sequence  TTW. . . FNFLASHDGIGLNPLRGLLPESEILELVEALQQEGALVNWKNNPDGTRSPYEINVTYMDALSRRESSDEERCAR
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Template Sequence  QAAQGLWNLLDSHDTERFLTSCG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GNEAK
Template Known Secondary structure  TT
S

TTS

TT....................................................T
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   408.410.........420.........430 .....
 
   405....410.........420.........430.........440.........450.........460.........470.........480....
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Query Sequence  FILAHAILLSFPGVPAIYIQSILGSRNDYAGVEKLGYNRAINRKKYHSKEITRELNDEATLRHAVYHELSRLITLRRSHN
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Template Sequence  FRLAVLFQMTYLGTPLIYYGDEIGMA. . . . . . . . . GATDPDCRRPMIWEE. . . . . . . . KEQNRGLFEFYKELIRLRHRLA
Template Known Secondary structure  TTSSSTTGGGT

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STTTT






G........GGS

T
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   436...440.........450.........460. ........470...... ...480.........490........
 
   485....490...... ...500.........510.........520.........530 .........540...... ...550....
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Query Sequence  EFHPDNNFTIDT. INSSVMRIPRSNADGNCLTGLFNVSKNIQHVNIT. . . . . NLHGRDLISEVDILGN. . . . EITLRPWQ
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Template Sequence  SLTRGNVRSWHADKQANLYAFVRTV. QDQHVGVVLNNRGEKQTVLLQVPESGGKTWLDCLTGEEVHGKQGQLKLTLRPYQ
Template Known Secondary structure 
TTTT.TT
SSS



TTS
S

TTS




TT

TT
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   499500.........510.........520... ......530.........540.........550.........560.........570.......
 
   555...
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Query Sequence  VMWI
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Template Sequence  GMIL
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   578.580.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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