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Job DescriptionP76041
Confidence100.00%DateThu Jan 5 12:17:40 GMT 2012
Rank84Aligned Residues375
% Identity14%Templatec1gcyA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:glucan 1,4-alpha-maltotetrahydrolase; PDBTitle: high resolution crystal structure of maltotetraose-forming2 exo-amylase
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   47..50..... ....60.........70.........80.........90. ........100.........110........
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Query Sequence  SDVVLITYA. DQFHSNDLKPLPTFNQFYHQWLQSIFSHVHLLPFYP. . . . . . . WSSDDGFSVIDYHQVASEAGEWQDIQQ
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Template Sequence  DEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSKSGGGEGYFWHDF. NKNGRYGSDAQLRQ
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TTSTTTTT
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B


B

SSTT
SSS.
S
SSS

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   16...20.........30.........40.........50.........60.........70.........80 .........90....
 
   119120.... .....130.........140.........150.........160.........170.........180.........190...
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Query Sequence  LGECSH. . . . . LMFDFVCNHMSAKSEWFKNYLQQHPGFEDFFIAVDPQTDLSAVTRPRALPLLTPFQMRDHSTRHLWTTF
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Template Sequence  AASALGGAGVKVLYDVVPNHMNRGYPDKEI. . . . . . . . . . . . . . . . . . . . . NLPAGQGFWRNDCADPGNYPNDCDDGDRF
Template Known Secondary structure  TT


SB

TT
SS
S
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SSSS
BGGGS


SSS
BTTBSS

S
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   98.100.........110.........120....... ..130.........140.........150......
 
   194.....200.........210......... 220.........230.........240.........250.........260.........270..
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Query Sequence  SDDQIDLNYRSPEVLLAMVDVLLCYL. AKGAEYVRLDAVGFMWKEPGTSCIHLEKTHLIIKLLRSIIDNVAPGTVIITET
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Template Sequence  IGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFVRGYAP. . . . . . . . . . . . . . . . ERVNSWMTDSADNSFCVGEL
Template Known Secondary structure  TTSTTBB
TTSS
S
GGGS
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TTS

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   157..160.........170.........180.........190.........200 .........210.........220
 
   273......280.........290.........300 .........310.........320.........330.........340....
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Query Sequence  NVPHKDNIAYFGAGDDEAHMVYQFSLPP. . . . . . . . LVLHAVQKQNVEALCAWAQNLTLPSSNTTWFNFLASHDGIGLNP
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Template Sequence  WKGPSEYPNWDWRNTASWQQIIKDWSDRAKCPVFDFALKERMQNGSIADWKHGLNGNPDPRWREVAVTFVDNHDTGYSPG
Template Known Secondary structure 


GGGS
TTSGGGGS
TS

S
GGGGGGSGGG
SSTT
S

TTTSB
SS
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   221........230.........240.........250.........260.........270.........280.........290.........300
 
   345....350.........360.........370.........380.........390.........400.........410.........420....
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Query Sequence  LRGLLPESEILELVEALQQEGALVNWKNNPDGTRSPYEINVTYMDALSRRESSDEERCARFILAHAILLSFPGVPAIYIQ
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Template Sequence  QNGGQHHWALQDG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LIRQAYAYILTSPGTPVVYWD
Template Known Secondary structure  GGGB

SS


GG..............................................GSSS
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   301........310... ......320.........330....
 
   425....430.........440.........450.........460.........470.........480.........490.........500....
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Query Sequence  SILGSRNDYAGVEKLGYNRAINRKKYHSKEITRELNDEATLRHAVYHELSRLITLRRSHNEFHPDNNFTIDTINSSVMRI
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Template Sequence  HMYDWG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YGDFIRQLIQVRRAAGVRADSAISFHSGYSG. . . LV
Template Known Secondary structure  TSS......................................
T

TT

TTSSS...
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   335....340 .........350.........360.........370. ..
 
   505....510.........520.........530.........540.........550
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Query Sequence  PRSNADGNCLTGLFNVSKNIQHVNITNLHGRDLISEVDILGNEITL
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Template Sequence  ATVSGSQQTLVVA. LNSDLGNPGQVASGSFSEAVNAS. . . NGQVRV
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SS
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GGGT

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T...TTT
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   374.....380...... ...390.........400......... 410.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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