Job Description P77569 Confidence 100.00% Date Thu Jan 5 12:30:40 GMT 2012 Rank 3 Aligned Residues 250 % Identity 23% Template c3r4kD_ PDB info PDB header:dna binding protein Chain: D: PDB Molecule:transcriptional regulator, iclr family; PDBTitle: crystal structure of a putative iclr transcriptional regulator2 (tm1040_3717) from silicibacter sp. tm1040 at 2.46 a resolution Resolution 2.46 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	T	R	G	L	M	L	L	N	M	L	N	K	L	D	G	G	A	S	V	G	L	L	A	E	L	S	G	L	H	R	T	T	V	R	R	L	L	E	T	L	Q	E	E	G	Y	V	R	R	S	P	S	D	D	S	F	R	L	T	I	K	V	R	Q	L	S	E	G	F	R	D	E	Q	W	I	S	A	L	A
Query Conservation
Alig confidence																																																						.	.
Template Conservation																																																						.	.
Template Sequence		T	V	S	K	A	L	T	L	L	T	Y	F	N	H	G	R	L	E	I	G	L	S	D	L	T	R	L	S	G	X	N	K	A	T	V	Y	R	L	X	S	E	L	Q	E	A	G	F	V	E	Q	V	E	.	.	R	S	Y	R	L	G	P	Q	V	L	R	L	A	A	L	R	E	A	S	V	P	I	L	S	A	S
Template Known Secondary structure											T	T		B	T	T	B	S													S															T	T	S						.	.							T	T												S
Template Predicted Secondary structure																																																						.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	L	L	G	D	L	L	R	E	V	V	W	P	T	D	V	S	T	L	D	V	D	A	M	V	V	R	E	T	T	H	R	F	S	R	L	S	F	H	R	A	M	V	G	R	R	L	P	L	L	K	T	A	S	G	L	T	W	L	A	F	C	P	E	Q	D	R	K	E	L	I	E	M	L	A	S	R	P	G
Query Conservation
Alig confidence																																																																												.
Template Conservation																																																																												.
Template Sequence		R	R	V	L	R	E	L	S	E	D	T	G	E	T	T	H	L	S	L	L	Q	G	E	Q	L	A	S	L	S	H	A	Y	S	S	R	N	A	T	K	V	X	X	E	D	A	E	V	L	T	F	H	G	T	A	S	G	L	A	V	L	A	Y	S	E	P	S	F	V	D	A	V	L	A	A	.	P	L	T	A	R
Template Known Secondary structure													S	S									T	T											S	S		S	S						T	T					T	T	T	S								T	T	S											S	.					S
Template Predicted Secondary structure																																																																												.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		D	D	Y	Q	L	A	R	E	P	L	K	L	E	A	I	L	A	R	A	R	K	E	G	Y	G	Q	N	Y	R	G	W	D	Q	E	E	K	I	A	S	I	A	V	P	L	R	S	E	.	Q	R	V	I	G	C	L	N	L	V	Y	M	A	S	A	M	T	I	E	Q	A	A	E	K	H	L	P	A	L	Q	R	V
Query Conservation																																																	.
Alig confidence								.																							.	.																	.																					.
Template Conservation								.																							.	.																																						.
Template Sequence		T	P	Q	T	Q	T	.	D	P	A	A	I	R	A	E	I	A	E	V	R	R	T	G	L	A	Q	S	I	G	.	.	G	F	E	A	E	V	H	S	H	A	V	P	I	F	G	P	D	R	A	V	L	G	A	L	A	V	A	A	P	T	S	R	X	T	P	D	Q	.	K	R	T	I	P	P	A	L	R	A	A
Template Known Secondary structure		S	T	T				.																S						S	.	.	S	S	S	T	T											T	T	S												G	G	G						.
Template Predicted Secondary structure								.																							.	.																																						.
Template SS confidence
		162	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	Q	I	E	E	G	V	E	S	Q	A	I	L	V	A	G	R	R	S
Query Conservation
Alig confidence														.	.
Template Conservation														.	.
Template Sequence		G	L	S	L	T	E	R	I	G	G	A	C	.	.	P	P	E	F	P	T
Template Known Secondary structure									T	T				.	.		T	T	S
Template Predicted Secondary structure														.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.			250	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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