Job Description P77569 Confidence 100.00% Date Thu Jan 5 12:30:40 GMT 2012 Rank 7 Aligned Residues 239 % Identity 23% Template c2xroE_ PDB info PDB header:dna-binding protein/dna Chain: E: PDB Molecule:hth-type transcriptional regulator ttgv; PDBTitle: crystal structure of ttgv in complex with its dna operator Resolution 3.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	L	T	R	G	L	M	L	L	N	M	L	N	K	L	D	G	G	A	S	V	G	L	L	A	E	L	S	G	L	H	R	T	T	V	R	R	L	L	E	T	L	Q	E	E	G	Y	V	R	R	S	P	S	D	D	S	F	R	L	T	I	K	V	R	Q	L	S	E	G	F	R	D	E	Q	W	I	S	A	L
Query Conservation
Alig confidence																																																																									.	.
Template Conservation																																																																									.	.
Template Sequence		Q	V	I	A	R	A	A	S	I	M	R	A	L	G	S	H	P	H	G	L	S	L	A	A	I	A	Q	L	V	G	L	P	R	S	T	V	Q	R	I	I	N	A	L	E	E	E	F	L	V	E	A	L	G	P	A	G	G	F	R	L	G	P	A	L	G	Q	L	I	N	Q	A	.	.	Q	T	D	I	L	S	L
Template Known Secondary structure																		T	T		B									S	S															T	T	T	S					S	S	S	S						T								T	T	.	.	T	T	T
Template Predicted Secondary structure																																																																									.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.			.	.	.	.	90	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	P	L	L	G	D	L	L	R	E	V	V	W	P	T	D	V	S	T	L	D	V	D	A	M	V	V	R	E	T	T	H	R	F	S	R	L	S	F	H	R	A	M	V	G	R	R	L	P	L	L	K	T	A	S	G	L	T	W	L	A	F	C	P	E	Q	D	R	K	E	L	I	E	M	L	A	S	R	P
Query Conservation
Alig confidence																																										.																																			.
Template Conservation																																										.																																			.
Template Sequence		V	K	P	Y	L	R	S	L	A	E	E	L	D	E	S	V	S	L	A	S	L	A	G	D	K	I	Y	V	L	D	R	I	V	S	E	R	E	L	R	V	.	V	F	P	I	G	I	N	V	P	A	A	A	T	A	A	G	K	V	L	L	A	A	L	P	D	E	T	L	Q	A	A	L	G	E	.	Q	L	P	V
Template Known Secondary structure													S		S									T	T												S	S	S			.				T	T					T	T	T	S									S	S		T	T					T	T		S	.	S
Template Predicted Secondary structure																																										.																																			.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	D	Y	Q	L	A	R	E	P	L	K	L	E	A	I	L	A	R	A	R	K	E	G	Y	G	Q	N	Y	R	G	W	D	Q	E	E	K	I	A	S	I	A	V	P	L	R	S	E	Q	R	V	I	G	C	L	N	L	V	Y	M	A	S	A	M	T	I	E	Q	A	A	E	K	H	L	P	A	L	Q	R	V
Query Conservation
Alig confidence									.	.																						.	.																			.																		.	.
Template Conservation									.	.																						.	.																			.																		.	.
Template Sequence		L	T	S	N	T	L	G	.	.	R	K	A	L	V	K	Q	L	S	E	V	R	Q	S	G	V	A	S	D	L	D	.	.	E	H	I	D	G	V	S	S	F	A	T	L	L	D	T	Y	L	G	.	Y	Y	S	L	A	I	V	M	P	S	S	R	A	S	K	Q	S	.	.	D	L	I	K	K	A	L	L	Q	S
Template Known Secondary structure			S	S	S				.	.															S						S	.	.	S	S	S	T	T											T	T		.										S	T	T	T	T	T	S	S	.	.
Template Predicted Secondary structure									.	.																						.	.																			.																		.	.
Template SS confidence
		171	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.			.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.			.	.	.	.	.	.	240	.	.	.
		253	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	Q	I	E	E	G	V	E	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	N	I	E	R	A	I	G	R
Template Known Secondary structure							T	T	S
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions